Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d04r
(624 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60970.1 68414.m06863 clathrin adaptor complex small chain fa... 126 1e-29
At3g09800.1 68416.m01165 clathrin adaptor complex small chain fa... 112 2e-25
At4g08520.1 68417.m01403 clathrin adaptor complex small chain fa... 104 4e-23
At3g09800.2 68416.m01166 clathrin adaptor complex small chain fa... 85 4e-17
At3g50860.1 68416.m05569 clathrin adaptor complex small chain fa... 33 0.15
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe... 30 1.4
At2g19790.1 68415.m02312 clathrin adaptor complex small chain fa... 30 1.4
At4g10380.1 68417.m01703 major intrinsic family protein / MIP fa... 28 4.4
At4g33510.1 68417.m04759 2-dehydro-3-deoxyphosphoheptonate aldol... 28 5.8
At3g14120.2 68416.m01786 expressed protein similar to Nuclear po... 27 7.7
At3g14120.1 68416.m01785 expressed protein similar to Nuclear po... 27 7.7
At1g10385.1 68414.m01170 hypothetical protein 27 7.7
>At1g60970.1 68414.m06863 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 177
Score = 126 bits (304), Expect = 1e-29
Identities = 72/172 (41%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Frame = -2
Query: 536 VKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIXLDGLTX 369
VK + +LD EG R+ KYY D PT Q+AFEK++F KT + NA E+ L+
Sbjct: 7 VKNILLLDSEGKRVAVKYYSDD-WPTNSAQEAFEKSVFTKTQKTNARTEVEVTALENNIV 65
Query: 368 VYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFDE 189
VYK DL F+V G ENELIL SVL L ++V+L LD + L+FDE
Sbjct: 66 VYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIFLSFDE 125
Query: 188 ICDGGVILDADPTSIVSRAALRTED--VPLGXQTVXQVXQSAREQLKWSLLK 39
I DGG++L+ D I +A + + D PL QT+ Q +ARE L SL+K
Sbjct: 126 IIDGGIVLETDANVIAGKAGINSTDPNAPLSEQTISQALATAREHLTRSLMK 177
>At3g09800.1 68416.m01165 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 179
Score = 112 bits (269), Expect = 2e-25
Identities = 68/172 (39%), Positives = 92/172 (53%), Gaps = 6/172 (3%)
Frame = -2
Query: 539 IVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIXLDGLT 372
+VK + +LD EG R+ KYY D PT + +FEK +F+KT + NA EI LD
Sbjct: 8 LVKNILLLDSEGKRVAVKYYSDD-WPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNI 66
Query: 371 XVYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFD 192
VYK DL F+V G ENELIL SVL ++V+L LD + L D
Sbjct: 67 IVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFLCLD 126
Query: 191 EICDGGVILDADPTSIVSRAALRTEDV--PLGXQTVXQVXQSAREQLKWSLL 42
E+ D GV+L+ DP I + A+++ + L QT+ Q +ARE L SLL
Sbjct: 127 EMVDQGVVLETDPNVIAGKVAMQSTEASGSLSEQTLTQALATAREHLARSLL 178
>At4g08520.1 68417.m01403 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 181
Score = 104 bits (250), Expect = 4e-23
Identities = 64/172 (37%), Positives = 90/172 (52%), Gaps = 6/172 (3%)
Frame = -2
Query: 539 IVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIXLDGLT 372
+VK + +LD EG R+ KYY D T + AFEK +F+KT + NA EI L+
Sbjct: 10 LVKNILLLDSEGKRVAVKYYSDD-WATNASKLAFEKYVFSKTSKTNARTEAEITLLESNI 68
Query: 371 XVYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFD 192
VYK DL F+V G ENEL+L SVL ++V+L LD + L D
Sbjct: 69 VVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFLCLD 128
Query: 191 EICDGGVILDADPTSIVSRAALRTEDV--PLGXQTVXQVXQSAREQLKWSLL 42
E+ D G++L+ D I + A+++ + L QT+ Q +ARE L SLL
Sbjct: 129 EMVDQGMVLETDANVIAGKVAMQSAEASGSLSEQTLTQALATAREHLARSLL 180
>At3g09800.2 68416.m01166 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 138
Score = 85.0 bits (201), Expect = 4e-17
Identities = 51/126 (40%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Frame = -2
Query: 539 IVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANA----EIIXLDGLT 372
+VK + +LD EG R+ KYY D PT + +FEK +F+KT + NA EI LD
Sbjct: 8 LVKNILLLDSEGKRVAVKYYSDD-WPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNI 66
Query: 371 XVYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVMLAFD 192
VYK DL F+V G ENELIL SVL ++V+L LD + L D
Sbjct: 67 IVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFLCLD 126
Query: 191 EICDGG 174
E+ D G
Sbjct: 127 EMVDQG 132
>At3g50860.1 68416.m05569 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 166
Score = 33.1 bits (72), Expect = 0.15
Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Frame = -2
Query: 539 IVKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFE---KNLFNKTHRAN--AEIIXLDG- 378
++K + +++ +G L K+YD LP K+Q+ L ++ + EI L G
Sbjct: 1 MIKAVMMMNTQGKPRLAKFYD--YLPVEKQQELIRGVFSVLCSRPENVSNFLEIESLFGP 58
Query: 377 -LTXVYKSNVDLFFYVMGSSXENELILQSVLNALXESVSLXXXXXXXXXXXXXXLDAVML 201
VYK L+F ++ ENEL + ++ L E++ +
Sbjct: 59 DSRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLD-KCFSNVCELDIVFNYSKMHA 117
Query: 200 AFDEICDGGVILDADPTSIV 141
DEI GG +L+ ++
Sbjct: 118 VLDEIVFGGQVLETSSAEVM 137
>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
peroxiredoxin Q [Sedum lineare] GI:6899842; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 216
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = -2
Query: 533 KGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIXLDG 378
K + + Y+G ++ +Y D P +Q ++ + K +A AE+I + G
Sbjct: 86 KPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG 137
>At2g19790.1 68415.m02312 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 143
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = -2
Query: 536 VKGMCILDYEGNRILXKYYDKDVLPTTKEQKAFEKNLFNKTHRANAE---IIXLDGLTXV 366
++ + +++ +G L +YY+ T +E++A E + K N + + V
Sbjct: 3 IRFILMVNKQGQTRLAQYYE---WLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIV 59
Query: 365 YKSNVDLFFYVMGSSXENELILQSVLNALXESV 267
Y+ LFF V ENEL + ++ L E++
Sbjct: 60 YRRYASLFFMVGVDDDENELAILEFIHLLVETM 92
>At4g10380.1 68417.m01703 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 304
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 116 PRCAALPGLRSTWDQH 163
PRC LP + STW QH
Sbjct: 47 PRCKCLPVMGSTWGQH 62
>At4g33510.1 68417.m04759 2-dehydro-3-deoxyphosphoheptonate aldolase
2 / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
2 / DAHP synthetase 2 (DHS2) nearly identical to
SP|Q00218
Length = 507
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 139 AGQRCAPRTCPWEXKQXPRYXNQQGSNLSGPY*NEYKHLSTIH 11
AGQ PR+ P+E K + + +G N++G +E + H
Sbjct: 157 AGQFAKPRSDPFEEKDGVKLPSYRGDNINGDAFDEKSRIPDPH 199
>At3g14120.2 68416.m01786 expressed protein similar to Nuclear pore
complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
norvegicus]
Length = 1077
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 581 HTTMEGSLFEPTLYIVKGMC 522
+++ EGSL P YIV+G+C
Sbjct: 982 YSSKEGSLETPATYIVRGLC 1001
>At3g14120.1 68416.m01785 expressed protein similar to Nuclear pore
complex protein Nup107 (Nucleoporin Nup107) (107 kDa
nucleoporin) (p105) (Swiss-Prot:P52590) [Rattus
norvegicus]
Length = 1101
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 581 HTTMEGSLFEPTLYIVKGMC 522
+++ EGSL P YIV+G+C
Sbjct: 1006 YSSKEGSLETPATYIVRGLC 1025
>At1g10385.1 68414.m01170 hypothetical protein
Length = 754
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 392 IXLDGLTXVYKSNVDLFFYVMGSSXENE 309
I LDG+ V+ S VDL + S ENE
Sbjct: 449 IALDGVLQVFNSYVDLLINALPGSAENE 476
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,893,111
Number of Sequences: 28952
Number of extensions: 205031
Number of successful extensions: 502
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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