Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d04f
         (555 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    25   0.33 
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    25   0.33 
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.5  

>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 80  TQRWKVLCSNPHCTLSRGCAFWTMKETEFWPN-ITIKTSYPQLRSRRHL 223
           T+RW+ L  +    L +    WT +    W N +T +   P++ S R L
Sbjct: 18  TERWQRLSFDDEDNLPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFL 66


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 80  TQRWKVLCSNPHCTLSRGCAFWTMKETEFWPN-ITIKTSYPQLRSRRHL 223
           T+RW+ L  +    L +    WT +    W N +T +   P++ S R L
Sbjct: 18  TERWQRLSFDDEDNLPKDPRQWTREHVAQWINLVTQQHGLPEVPSSRFL 66


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 544 PRCAALPGLRSTWDQHP 494
           PR    PG  S W  HP
Sbjct: 202 PRTPDKPGKGSFWSLHP 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,255
Number of Sequences: 336
Number of extensions: 2458
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13725787
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)