Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d04f
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom...   101   7e-23
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    36   0.005
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   5.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   9.9  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    25   9.9  

>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score =  101 bits (242), Expect = 7e-23
 Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 8/146 (5%)
 Frame = +1

Query: 112 TLYIVKGMCILDYEGNRILAKYY--------DKDVLPTTKEQKAFEKNLFNKTHRAXAEI 267
           TLY V    ILD  G RI  KYY        +  V  + KE+K FEK LF KT +   +I
Sbjct: 4   TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKTQNDI 63

Query: 268 IMLDGLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLD 447
           +  DG   V  + +D+ FY++G   E E++L   L ++  ++ LL +   ++R L+EN D
Sbjct: 64  LTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENYD 123

Query: 448 AVMLAFDEICDGGVILDADPTSIVSR 525
            +++  DE  D GVIL+ +P  I +R
Sbjct: 124 QLVIVVDETIDDGVILETEPALIAAR 149


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 25/138 (18%), Positives = 59/138 (42%)
 Frame = +1

Query: 121 IVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLDGLTCVYK 300
           ++ G+ I + +G+ ++ K +  D+  +  E   F   +   T      I+ +   T +Y 
Sbjct: 1   MISGLFIFNLKGDTLICKTFRHDLKKSVTE--IFRVAILTNTDYRHP-IVSIGSSTYIYT 57

Query: 301 SXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDEICD 480
              DL+   +   +   +I+   L +L   ++    +  E  V  +N+  +    DE+ D
Sbjct: 58  KHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTV-KDNVSFIFELLDEMID 116

Query: 481 GGVILDADPTSIVSRAAL 534
            G+I   +P ++    ++
Sbjct: 117 YGIIQTTEPDALARSVSI 134


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 413 TWSGGSSWRTWMLLCLPSMRS 475
           +WS G  +  W+ + LPSM S
Sbjct: 437 SWSNGIDYAKWISVALPSMLS 457


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 130 GMCILDYEGNRILAK 174
           G C++DY G+R++A+
Sbjct: 457 GTCVVDYAGHRVVAQ 471


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 181 DKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLDGL 285
           D+D +P  K + + +KN+ N + +  A+++   GL
Sbjct: 55  DEDDIPIRKRRASSKKNMSNSSSKKRAKVMGNGGL 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,423
Number of Sequences: 5004
Number of extensions: 38570
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)