Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d04f
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 118 4e-27
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727... 115 2e-26
02_02_0646 + 12606569-12606582,12608702-12608750,12609387-126095... 112 2e-25
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 29 3.3
09_02_0437 - 9399982-9401253 28 5.8
10_06_0127 - 11027692-11027826,11027925-11027993,11029925-110300... 27 7.6
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 118 bits (283), Expect = 4e-27
Identities = 60/140 (42%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Frame = +1
Query: 124 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXA----EIIMLDGLTC 291
VK + +LD EG R+ KYY D PT + AFEK++F KT +A A EI+M DG
Sbjct: 7 VKNILLLDSEGKRVAVKYYTDD-WPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIV 65
Query: 292 VYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDE 471
VYK DL F+V G E ELIL S L +V ++LR N+++R +ENLD ++L DE
Sbjct: 66 VYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDE 125
Query: 472 ICDGGVILDADPTSIVSRAA 531
I DGG++L+ + + I + +
Sbjct: 126 IVDGGIVLETEGSVIAEKVS 145
>01_06_1282 +
35972234-35972244,35972451-35972522,35972714-35972747,
35973247-35973360,35974833-35975036,35975290-35975449,
35976093-35976240,35976345-35976422,35976854-35976938,
35977142-35977213
Length = 325
Score = 115 bits (277), Expect = 2e-26
Identities = 58/140 (41%), Positives = 81/140 (57%), Gaps = 4/140 (2%)
Frame = +1
Query: 124 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTH----RAXAEIIMLDGLTC 291
VK + +LD EG R+ KYY D P+ ++AFEK++F KT R AEI+M D
Sbjct: 151 VKNILVLDSEGKRVAVKYYSDD-WPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFV 209
Query: 292 VYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDE 471
VYK DL F+V G E ELIL S L ++ LLR + RR +ENLD + L DE
Sbjct: 210 VYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFLCLDE 269
Query: 472 ICDGGVILDADPTSIVSRAA 531
+ DGG++L+ D +I+ + +
Sbjct: 270 VVDGGIVLETDAKAILEKVS 289
>02_02_0646 +
12606569-12606582,12608702-12608750,12609387-12609546,
12610372-12610519,12610610-12610687,12611935-12612019,
12612098-12612157
Length = 197
Score = 112 bits (270), Expect = 2e-25
Identities = 60/145 (41%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
Frame = +1
Query: 124 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKT----HRAXAEIIMLDGLTC 291
VK + +LD EG R+ KY+ D + + AFEK++F KT R+ AEI + DG
Sbjct: 27 VKNILLLDSEGKRVAVKYFSDD-WSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIV 85
Query: 292 VYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDE 471
VYK DL F+V E ELI+ + L SV LLLR ++E+R +ENLD ++L DE
Sbjct: 86 VYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILLCIDE 145
Query: 472 ICDGGVILDADPTSIVSRAALRTED 546
I DGG+IL+ D +I + A D
Sbjct: 146 IVDGGIILETDANTIAGKVATNAVD 170
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +1
Query: 340 HEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDEICDGGVILDADPTSIV 519
H+ ILQ + +RR+ + V+ N+D ++ DE DG D I+
Sbjct: 611 HDSHTILQHSKEHCLMGIKGTVRRSTDGHVIHANIDTDIIIADEPTDGSTKKPEDMYRII 670
Query: 520 SRAAL 534
AL
Sbjct: 671 EHFAL 675
>09_02_0437 - 9399982-9401253
Length = 423
Score = 27.9 bits (59), Expect = 5.8
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = -2
Query: 533 SAARLTIDVGSAS------NITPPSQISSKASITASKFSMRTLRSM 414
SAA LTID GS S + PSQ SS S+ S+ S+ LRS+
Sbjct: 84 SAAALTIDAGSFSLAFLRDDDVLPSQWSSSWSVADSRGSLVLLRSL 129
>10_06_0127 -
11027692-11027826,11027925-11027993,11029925-11030011,
11030146-11030286
Length = 143
Score = 27.5 bits (58), Expect = 7.6
Identities = 27/136 (19%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Frame = +1
Query: 124 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKT-HRAXAEIIMLD--GLTCV 294
++ + +++ +G +A+YY+ + E++A E + K R + ++ V
Sbjct: 3 IRFVVMVNKQGQTRVAQYYEH---LSVDERRALEGEIVRKCLARTDHQCSFVEHRNYKVV 59
Query: 295 YKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDEI 474
Y+ LFF V + E EL + ++ L ++ N+ +M +L+ V +E+
Sbjct: 60 YRRYASLFFLVGVDNDENELAILEFIHLLVETMDRHF-GNVCELDIMFHLEKVHFMLEEM 118
Query: 475 CDGGVILDADPTSIVS 522
G I++ +I++
Sbjct: 119 VMNGCIVETSKQNILA 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,702
Number of Sequences: 37544
Number of extensions: 257860
Number of successful extensions: 560
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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