Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d04f
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59191| Best HMM Match : efhand (HMM E-Value=1.6e-14)                27   7.8  
SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   7.8  
SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)            27   7.8  

>SB_59191| Best HMM Match : efhand (HMM E-Value=1.6e-14)
          Length = 227

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 403 LRRNMERRVL--MENLDAVMLAFDEICDGGVILD 498
           L R +  +++   EN+    +AFD  CDG V LD
Sbjct: 36  LERKLRAKMVENFENIQRAFVAFDRRCDGFVTLD 69


>SB_56512| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1219

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 110  PHCTLSRGCAFWTMKETEFWPNITIKTSYPQLRSRRHL 223
            P C  + G    T+K+++F+ +  + +SY    +R HL
Sbjct: 950  PECLKAIGAQSGTLKDSQFFASSELSSSYRASNARLHL 987


>SB_11074| Best HMM Match : efhand (HMM E-Value=1.79366e-43)
          Length = 779

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 403 LRRNMERRVL--MENLDAVMLAFDEICDGGVILD 498
           L R +  +++   EN+    +AFD  CDG V LD
Sbjct: 336 LERKLRAKMVENFENIQRAFVAFDRRCDGFVTLD 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,824,903
Number of Sequences: 59808
Number of extensions: 300441
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)