Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d04f
(555 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002849-1|AAH02849.1| 177|Homo sapiens coatomer protein comple... 199 6e-51
AF151878-1|AAD34115.1| 177|Homo sapiens CGI-120 protein protein. 199 6e-51
AF086911-1|AAP97141.1| 177|Homo sapiens z-cop protein. 199 6e-51
AB047848-1|BAB17659.1| 177|Homo sapiens zeta1-COP protein. 199 6e-51
AK223188-1|BAD96908.1| 177|Homo sapiens coatomer protein comple... 197 2e-50
BC015924-1|AAH15924.1| 210|Homo sapiens coatomer protein comple... 168 1e-41
AB047849-1|BAB17660.1| 210|Homo sapiens zeta2-COP protein. 168 1e-41
AB037938-1|BAA90670.1| 210|Homo sapiens nonclathrin coat protei... 168 1e-41
CR457100-1|CAG33381.1| 144|Homo sapiens AP4S1 protein. 34 0.29
AF155159-1|AAD43329.1| 144|Homo sapiens adaptor-related protein... 34 0.29
AB030654-1|BAA82970.1| 144|Homo sapiens AP-4 clathrin adaptor-r... 34 0.29
>BC002849-1|AAH02849.1| 177|Homo sapiens coatomer protein complex,
subunit zeta 1 protein.
Length = 177
Score = 199 bits (485), Expect = 6e-51
Identities = 91/152 (59%), Positives = 121/152 (79%)
Frame = +1
Query: 100 LFEPTLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLD 279
+ EP+LY VK + ILD +G+R+ AKYYD D P+ KEQKAFEKN+FNKTHR +EI +L+
Sbjct: 5 ILEPSLYTVKAILILDNDGDRLFAKYYD-DTYPSVKEQKAFEKNIFNKTHRTDSEIALLE 63
Query: 280 GLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVML 459
GLT VYKS +DL+FYV+GSS+E EL+L + LN L+ S+S +LR+N+E+R L+EN++ + L
Sbjct: 64 GLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFL 123
Query: 460 AFDEICDGGVILDADPTSIVSRAALRTEDVPL 555
A DEI DGGVIL++DP +V R ALR EDVPL
Sbjct: 124 AVDEIVDGGVILESDPQQVVHRVALRGEDVPL 155
>AF151878-1|AAD34115.1| 177|Homo sapiens CGI-120 protein protein.
Length = 177
Score = 199 bits (485), Expect = 6e-51
Identities = 91/152 (59%), Positives = 121/152 (79%)
Frame = +1
Query: 100 LFEPTLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLD 279
+ EP+LY VK + ILD +G+R+ AKYYD D P+ KEQKAFEKN+FNKTHR +EI +L+
Sbjct: 5 ILEPSLYTVKAILILDNDGDRLFAKYYD-DTYPSVKEQKAFEKNIFNKTHRTDSEIALLE 63
Query: 280 GLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVML 459
GLT VYKS +DL+FYV+GSS+E EL+L + LN L+ S+S +LR+N+E+R L+EN++ + L
Sbjct: 64 GLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFL 123
Query: 460 AFDEICDGGVILDADPTSIVSRAALRTEDVPL 555
A DEI DGGVIL++DP +V R ALR EDVPL
Sbjct: 124 AVDEIVDGGVILESDPQQVVHRVALRGEDVPL 155
>AF086911-1|AAP97141.1| 177|Homo sapiens z-cop protein.
Length = 177
Score = 199 bits (485), Expect = 6e-51
Identities = 91/152 (59%), Positives = 121/152 (79%)
Frame = +1
Query: 100 LFEPTLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLD 279
+ EP+LY VK + ILD +G+R+ AKYYD D P+ KEQKAFEKN+FNKTHR +EI +L+
Sbjct: 5 ILEPSLYTVKAILILDNDGDRLFAKYYD-DTYPSVKEQKAFEKNIFNKTHRTDSEIALLE 63
Query: 280 GLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVML 459
GLT VYKS +DL+FYV+GSS+E EL+L + LN L+ S+S +LR+N+E+R L+EN++ + L
Sbjct: 64 GLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFL 123
Query: 460 AFDEICDGGVILDADPTSIVSRAALRTEDVPL 555
A DEI DGGVIL++DP +V R ALR EDVPL
Sbjct: 124 AVDEIVDGGVILESDPQQVVHRVALRGEDVPL 155
>AB047848-1|BAB17659.1| 177|Homo sapiens zeta1-COP protein.
Length = 177
Score = 199 bits (485), Expect = 6e-51
Identities = 91/152 (59%), Positives = 121/152 (79%)
Frame = +1
Query: 100 LFEPTLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLD 279
+ EP+LY VK + ILD +G+R+ AKYYD D P+ KEQKAFEKN+FNKTHR +EI +L+
Sbjct: 5 ILEPSLYTVKAILILDNDGDRLFAKYYD-DTYPSVKEQKAFEKNIFNKTHRTDSEIALLE 63
Query: 280 GLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVML 459
GLT VYKS +DL+FYV+GSS+E EL+L + LN L+ S+S +LR+N+E+R L+EN++ + L
Sbjct: 64 GLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFL 123
Query: 460 AFDEICDGGVILDADPTSIVSRAALRTEDVPL 555
A DEI DGGVIL++DP +V R ALR EDVPL
Sbjct: 124 AVDEIVDGGVILESDPQQVVHRVALRGEDVPL 155
>AK223188-1|BAD96908.1| 177|Homo sapiens coatomer protein complex,
subunit zeta 1 variant protein.
Length = 177
Score = 197 bits (480), Expect = 2e-50
Identities = 90/152 (59%), Positives = 120/152 (78%)
Frame = +1
Query: 100 LFEPTLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLD 279
+ EP+LY VK + ILD +G+R+ AKYYD D P+ KEQKAFEKN+FNKTHR +EI +L+
Sbjct: 5 ILEPSLYTVKAILILDNDGDRLFAKYYD-DTYPSVKEQKAFEKNIFNKTHRTDSEIALLE 63
Query: 280 GLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVML 459
GLT VYKS +DL+FYV+GSS+E EL+L + LN L+ S+ +LR+N+E+R L+EN++ + L
Sbjct: 64 GLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLRQMLRKNVEKRALLENMEGLFL 123
Query: 460 AFDEICDGGVILDADPTSIVSRAALRTEDVPL 555
A DEI DGGVIL++DP +V R ALR EDVPL
Sbjct: 124 AVDEIVDGGVILESDPQQVVHRVALRGEDVPL 155
>BC015924-1|AAH15924.1| 210|Homo sapiens coatomer protein complex,
subunit zeta 2 protein.
Length = 210
Score = 168 bits (409), Expect = 1e-41
Identities = 77/149 (51%), Positives = 106/149 (71%)
Frame = +1
Query: 100 LFEPTLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLD 279
L EP+LY +K + ILD +G R+LAKYYD D P+ KEQ FEKN+FNKT R +EI
Sbjct: 38 LQEPSLYTIKAVFILDNDGRRLLAKYYD-DTFPSMKEQMVFEKNVFNKTSRTESEIAFFG 96
Query: 280 GLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVML 459
G+T VYK+ +DLF YV+GSS+E EL+L S L L+ S++ +LR+N+E+R L+EN+D L
Sbjct: 97 GMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFL 156
Query: 460 AFDEICDGGVILDADPTSIVSRAALRTED 546
DEI DGGVIL++DP ++ + R +D
Sbjct: 157 VLDEIVDGGVILESDPQQVIQKVNFRADD 185
>AB047849-1|BAB17660.1| 210|Homo sapiens zeta2-COP protein.
Length = 210
Score = 168 bits (409), Expect = 1e-41
Identities = 77/149 (51%), Positives = 106/149 (71%)
Frame = +1
Query: 100 LFEPTLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLD 279
L EP+LY +K + ILD +G R+LAKYYD D P+ KEQ FEKN+FNKT R +EI
Sbjct: 38 LQEPSLYTIKAVFILDNDGRRLLAKYYD-DTFPSMKEQMVFEKNVFNKTSRTESEIAFFG 96
Query: 280 GLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVML 459
G+T VYK+ +DLF YV+GSS+E EL+L S L L+ S++ +LR+N+E+R L+EN+D L
Sbjct: 97 GMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFL 156
Query: 460 AFDEICDGGVILDADPTSIVSRAALRTED 546
DEI DGGVIL++DP ++ + R +D
Sbjct: 157 VLDEIVDGGVILESDPQQVIQKVNFRADD 185
>AB037938-1|BAA90670.1| 210|Homo sapiens nonclathrin coat protein
zeta-COP protein.
Length = 210
Score = 168 bits (409), Expect = 1e-41
Identities = 77/149 (51%), Positives = 106/149 (71%)
Frame = +1
Query: 100 LFEPTLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLD 279
L EP+LY +K + ILD +G R+LAKYYD D P+ KEQ FEKN+FNKT R +EI
Sbjct: 38 LQEPSLYTIKAVFILDNDGRRLLAKYYD-DTFPSMKEQMVFEKNVFNKTSRTESEIAFFG 96
Query: 280 GLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVML 459
G+T VYK+ +DLF YV+GSS+E EL+L S L L+ S++ +LR+N+E+R L+EN+D L
Sbjct: 97 GMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFL 156
Query: 460 AFDEICDGGVILDADPTSIVSRAALRTED 546
DEI DGGVIL++DP ++ + R +D
Sbjct: 157 VLDEIVDGGVILESDPQQVIQKVNFRADD 185
>CR457100-1|CAG33381.1| 144|Homo sapiens AP4S1 protein.
Length = 144
Score = 34.3 bits (75), Expect = 0.29
Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Frame = +1
Query: 121 IVKGMCILDYEGNRILAKYYDK-DVLPTTKEQKAFEKNLFNKTHRAXAEIIMLDGLTCVY 297
++K +++ +G L+KYY+ D+ T + K+ ++++ + I D +Y
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKD-FKLIY 59
Query: 298 KSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDEIC 477
+ LF V + E E+ + ++ + R E ++ NLD V + DE+
Sbjct: 60 RQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMF-NLDKVHIILDEMV 118
Query: 478 DGGVILDADPTSIVS 522
G I++ + I++
Sbjct: 119 LNGCIVETNRARILA 133
>AF155159-1|AAD43329.1| 144|Homo sapiens adaptor-related protein
complex AP-4 sigma4 subunit protein.
Length = 144
Score = 34.3 bits (75), Expect = 0.29
Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Frame = +1
Query: 121 IVKGMCILDYEGNRILAKYYDK-DVLPTTKEQKAFEKNLFNKTHRAXAEIIMLDGLTCVY 297
++K +++ +G L+KYY+ D+ T + K+ ++++ + I D +Y
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKD-FKLIY 59
Query: 298 KSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDEIC 477
+ LF V + E E+ + ++ + R E ++ NLD V + DE+
Sbjct: 60 RQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMF-NLDKVHIILDEMV 118
Query: 478 DGGVILDADPTSIVS 522
G I++ + I++
Sbjct: 119 LNGCIVETNRARILA 133
>AB030654-1|BAA82970.1| 144|Homo sapiens AP-4 clathrin
adaptor-related complex sigma4 subunit protein.
Length = 144
Score = 34.3 bits (75), Expect = 0.29
Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Frame = +1
Query: 121 IVKGMCILDYEGNRILAKYYDK-DVLPTTKEQKAFEKNLFNKTHRAXAEIIMLDGLTCVY 297
++K +++ +G L+KYY+ D+ T + K+ ++++ + I D +Y
Sbjct: 1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKD-FKLIY 59
Query: 298 KSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDEIC 477
+ LF V + E E+ + ++ + R E ++ NLD V + DE+
Sbjct: 60 RQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMF-NLDKVHIILDEMV 118
Query: 478 DGGVILDADPTSIVS 522
G I++ + I++
Sbjct: 119 LNGCIVETNRARILA 133
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,101,294
Number of Sequences: 237096
Number of extensions: 1433959
Number of successful extensions: 2735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2727
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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