Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d04f
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...   177   3e-45
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    38   0.005
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    27   6.9  
AL032626-28|CAO82072.1|  337|Caenorhabditis elegans Hypothetical...    27   9.1  

>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score =  177 bits (432), Expect = 3e-45
 Identities = 77/147 (52%), Positives = 116/147 (78%), Gaps = 1/147 (0%)
 Frame = +1

Query: 112 TLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHR-AXAEIIMLDGLT 288
           +LY +KG+ ILD +GNR+LAKYYD+    T KEQKAFEK+LF+KT R   A+I++LDG+T
Sbjct: 10  SLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVT 69

Query: 289 CVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFD 468
           C+Y+S VDL+FYV+GS+ E EL L + L  LY +VS++LR+N+E++ L++++D +ML  D
Sbjct: 70  CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129

Query: 469 EICDGGVILDADPTSIVSRAALRTEDV 549
           EICD G+I++ D  ++V R AL++++V
Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDEV 156


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
 Frame = +1

Query: 124 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAE-IIMLDGLTCVYK 300
           + G+ ILD +GN ++++ Y  DV  +  E+  F   L  K     A  +++  G++  Y 
Sbjct: 3   ISGLFILDLKGNVVISRNYRGDVDMSCIEK--FMPLLVEKEDEGSASPVLVHQGISYTYI 60

Query: 301 SXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLR--RNMERRVLMENLDAVMLAFDEI 474
             ++++   +   +   +++   L+ALY  V +     + +E   + +N   +   FDE+
Sbjct: 61  KYMNVYLVTISKKNTNVILV---LSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEM 117

Query: 475 CDGG 486
            D G
Sbjct: 118 LDFG 121


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 374 MHSTSLLVCC*EGTW-SGGSSWRTWMLLCLPSMRSATAV 487
           ++S S+LV     TW +GGS W  W LLC+  +  AT +
Sbjct: 129 LYSFSVLVIV--ATWLTGGSKWTPW-LLCIVFIVRATQI 164


>AL032626-28|CAO82072.1|  337|Caenorhabditis elegans Hypothetical
           protein Y37D8A.9b protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 145 DYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLDGLTCVYKSXVDLFFY 324
           +Y  ++I+  Y     +P + EQ     +L  +   A  +I  L  L C  +  VD F  
Sbjct: 156 EYSVDQIIEDYIK--TIPVSNEQMRTVDDLLIEYEEADIKITNL-ALICTARGLVDYFNV 212

Query: 325 VMGSSHE 345
            +GSS++
Sbjct: 213 TLGSSYQ 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,702,790
Number of Sequences: 27780
Number of extensions: 222782
Number of successful extensions: 540
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)