Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d04f
(555 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60970.1 68414.m06863 clathrin adaptor complex small chain fa... 125 2e-29
At3g09800.1 68416.m01165 clathrin adaptor complex small chain fa... 119 2e-27
At4g08520.1 68417.m01403 clathrin adaptor complex small chain fa... 111 2e-25
At3g09800.2 68416.m01166 clathrin adaptor complex small chain fa... 103 8e-23
At3g50860.1 68416.m05569 clathrin adaptor complex small chain fa... 36 0.014
At4g24910.1 68417.m03566 hypothetical protein contains Pfam prof... 29 2.1
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe... 29 2.8
At4g10380.1 68417.m01703 major intrinsic family protein / MIP fa... 28 3.6
At5g08640.1 68418.m01027 flavonol synthase 1 (FLS1) identical to... 28 4.8
>At1g60970.1 68414.m06863 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 177
Score = 125 bits (302), Expect = 2e-29
Identities = 63/145 (43%), Positives = 89/145 (61%), Gaps = 4/145 (2%)
Frame = +1
Query: 124 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXA----EIIMLDGLTC 291
VK + +LD EG R+ KYY D PT Q+AFEK++F KT + A E+ L+
Sbjct: 7 VKNILLLDSEGKRVAVKYYSDD-WPTNSAQEAFEKSVFTKTQKTNARTEVEVTALENNIV 65
Query: 292 VYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFDE 471
VYK DL F+V G E ELIL S L L+ +V+LLLR N+++R ++NLD + L+FDE
Sbjct: 66 VYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIFLSFDE 125
Query: 472 ICDGGVILDADPTSIVSRAALRTED 546
I DGG++L+ D I +A + + D
Sbjct: 126 IIDGGIVLETDANVIAGKAGINSTD 150
>At3g09800.1 68416.m01165 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 179
Score = 119 bits (286), Expect = 2e-27
Identities = 62/146 (42%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Frame = +1
Query: 121 IVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTH----RAXAEIIMLDGLT 288
+VK + +LD EG R+ KYY D PT + +FEK +F+KT R AEI +LD
Sbjct: 8 LVKNILLLDSEGKRVAVKYYSDD-WPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNI 66
Query: 289 CVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFD 468
VYK DL F+V G +E ELIL S L + +V+LLLR N+E+ +ENLD + L D
Sbjct: 67 IVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFLCLD 126
Query: 469 EICDGGVILDADPTSIVSRAALRTED 546
E+ D GV+L+ DP I + A+++ +
Sbjct: 127 EMVDQGVVLETDPNVIAGKVAMQSTE 152
>At4g08520.1 68417.m01403 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 181
Score = 111 bits (268), Expect = 2e-25
Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 4/146 (2%)
Frame = +1
Query: 121 IVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTH----RAXAEIIMLDGLT 288
+VK + +LD EG R+ KYY D T + AFEK +F+KT R AEI +L+
Sbjct: 10 LVKNILLLDSEGKRVAVKYYSDD-WATNASKLAFEKYVFSKTSKTNARTEAEITLLESNI 68
Query: 289 CVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFD 468
VYK DL F+V G +E EL+L S L + +V+LLLR N+E+ +ENLD + L D
Sbjct: 69 VVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFLCLD 128
Query: 469 EICDGGVILDADPTSIVSRAALRTED 546
E+ D G++L+ D I + A+++ +
Sbjct: 129 EMVDQGMVLETDANVIAGKVAMQSAE 154
>At3g09800.2 68416.m01166 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 138
Score = 103 bits (247), Expect = 8e-23
Identities = 56/126 (44%), Positives = 75/126 (59%), Gaps = 4/126 (3%)
Frame = +1
Query: 121 IVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTH----RAXAEIIMLDGLT 288
+VK + +LD EG R+ KYY D PT + +FEK +F+KT R AEI +LD
Sbjct: 8 LVKNILLLDSEGKRVAVKYYSDD-WPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNI 66
Query: 289 CVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVMLAFD 468
VYK DL F+V G +E ELIL S L + +V+LLLR N+E+ +ENLD + L D
Sbjct: 67 IVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFLCLD 126
Query: 469 EICDGG 486
E+ D G
Sbjct: 127 EMVDQG 132
>At3g50860.1 68416.m05569 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 166
Score = 36.3 bits (80), Expect = 0.014
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Frame = +1
Query: 121 IVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLF--------NKTHRAXAEIIML 276
++K + +++ +G LAK+Y D LP K+Q+ + +F N ++ E +
Sbjct: 1 MIKAVMMMNTQGKPRLAKFY--DYLPVEKQQELI-RGVFSVLCSRPENVSNFLEIESLFG 57
Query: 277 DGLTCVYKSXVDLFFYVMGSSHEXELILQSXLNALYXSVSLLLRRNMERRVLMENLDAVM 456
VYK L+F ++ E EL + + L ++ E ++ N +
Sbjct: 58 PDSRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCFSNVCELDIVF-NYSKMH 116
Query: 457 LAFDEICDGGVILDADPTSIV 519
DEI GG +L+ ++
Sbjct: 117 AVLDEIVFGGQVLETSSAEVM 137
>At4g24910.1 68417.m03566 hypothetical protein contains Pfam profile
PF04669: Protein of unknown function (DUF579)
Length = 315
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 434 WRTWMLLCLPSMRSATAV*YWMLIPRRS*AGQRCAPRT 547
W +W LC ++ SA + I R+S A + C+P T
Sbjct: 274 WLSWEFLCQENLVSAKGTFWKFRIKRQSNASRFCSPET 311
>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
peroxiredoxin Q [Sedum lineare] GI:6899842; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 216
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 127 KGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAXAEIIMLDG 282
K + + Y+G ++ +Y D P +Q ++ + K +A AE+I + G
Sbjct: 86 KPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISG 137
>At4g10380.1 68417.m01703 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 304
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 544 PRCAALPGLRSTWDQH 497
PRC LP + STW QH
Sbjct: 47 PRCKCLPVMGSTWGQH 62
>At5g08640.1 68418.m01027 flavonol synthase 1 (FLS1) identical to
SP|Q96330; contains PF03171 2OG-Fe(II) oxygenase
superfamily
Length = 336
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = -3
Query: 247 ESY*TSSSQMPSAP*LWVGRLYRNIWPKFC 158
E Y T + P WV L+ IWP C
Sbjct: 113 EGYGTKLQKDPEGKKAWVDHLFHRIWPPSC 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,024,719
Number of Sequences: 28952
Number of extensions: 205327
Number of successful extensions: 475
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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