Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d03r
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0120 - 10255303-10255518,10256490-10256582,10256774-102568...    29   4.0  

>11_03_0120 -
           10255303-10255518,10256490-10256582,10256774-10256872,
           10258145-10258264,10258345-10258467,10259933-10260046,
           10261173-10261361,10263100-10263266,10263829-10263913,
           10264176-10264370,10266251-10266436,10266575-10266614,
           10267899-10267966
          Length = 564

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 208 NSCTLGMCSINT*ANGLDCSRSSPWAAAIIRHVVTFHKLYKLSE 339
           NS  +G+C IN   N + C   +P + A  RHV   H    L+E
Sbjct: 299 NSNYVGLCPINKVLNMICCWIENPNSNAFRRHVPRIHDFLWLAE 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,969,128
Number of Sequences: 37544
Number of extensions: 268332
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)