Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d03f
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    27   1.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   3.9  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   3.9  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   5.2  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   5.2  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   6.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.0  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   9.0  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 505 DKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
           D   + ++I+   + V F   EI+ GY  +SLA+  D+ H+
Sbjct: 3   DLARQTRIILLLGIDVTFFFIEIITGYAIDSLALIADSFHM 43


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +1

Query: 28   RTTRAMSSHLINEKYHNDTKINTLNAFTDKNL-VPL-SGRYRSKSLSSDKLNKTNADRAA 201
            R ++ +   LIN     DTK   LN F  KN+ VP+  G+         KL+ ++A  + 
Sbjct: 3496 RYSKIVRQLLINTSLKKDTKEYWLNLFRSKNIYVPIFQGKLDMAITLGHKLSISSAKLST 3555

Query: 202  ILEDV 216
            I   V
Sbjct: 3556 ICRSV 3560


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 130 LSGRYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKSETP 252
           LSGRY  + +  D     +  +  ++EDVE Q I D    P
Sbjct: 320 LSGRYDFRKVEDDHSTTASDQKKKLIEDVE-QLIVDNHLQP 359


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 46  SSHLINEKYHNDTKINTLNAFTDKNLVPLSGRYRSKSLSSDKL 174
           S+HL +  Y N  +I  L + +  N++P+  +  S  L   +L
Sbjct: 546 SNHLYSGSYDNSVRIWDLRSGSPINIIPMEKKVNSLRLYQGRL 588


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 24/74 (32%), Positives = 31/74 (41%)
 Frame = -1

Query: 329 YDTCPSLYPFIFSCPLTISLFPTRQPGVSDLSVMYWTSTSSNIAARSAFVLFNLSLDKLF 150
           YDT     P I     + S  PT    VS    ++ TS SS    +   VL N+  D + 
Sbjct: 271 YDTFFLPMPLISHPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRTTKDLEVLNNVLKDSIE 330

Query: 149 DLYLPLNGTKFLSV 108
            L LP    KF S+
Sbjct: 331 PLLLP-TVNKFASL 343


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +1

Query: 91  NTLNAFTDKNLVPLSGRYRSKSLSSDKLNKTNADRAAILEDVE--VQYITDKSE 246
           N   +FTD +++ L           D +NK N D    L+  E  +QY+  ++E
Sbjct: 544 NRKTSFTDSHILRLQDEVNQLRNELDLVNKRNEDLLIELQGKEEKIQYLETENE 597


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 192  ISVCFIQLITRQTFRSISTTQ 130
            +S CF  L++ Q+ +SIS TQ
Sbjct: 3737 LSYCFKHLVSLQSLKSISRTQ 3757


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = +1

Query: 1   ESIRAPEIDRTTRAMSSHLINEKYHNDTKINTLNAFTDKNLVPL---SGRYRSKSLSSDK 171
           + +R P+I RTT    +   N    N  K+  +     ++L P    S   R +    D 
Sbjct: 338 KKMRLPKISRTTDTPPASTSNSNKKNLDKLKKMRKLCSRSLEPYELDSNTQRKRKRYEDS 397

Query: 172 LNKT 183
           L K+
Sbjct: 398 LKKS 401


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 22  IDRTTRAMSSHLINEKYHNDTKINTLNAFTDKNLVPLSGRYR 147
           +++   A+SSHL   K    TKI+TL + T+     LS  YR
Sbjct: 386 LEKRNPALSSHLQLLKETLQTKISTLISNTNATQHKLSTLYR 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,637
Number of Sequences: 5004
Number of extensions: 46444
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)