Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d03f
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0214 - 1615519-1616775 56 2e-08
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 38 0.007
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 33 0.19
08_02_0707 - 20212190-20214592 32 0.43
06_03_0548 + 22004338-22006746 31 1.00
09_03_0040 + 11816056-11819069,11819837-11820428 29 2.3
01_06_0574 + 30355217-30355460,30356006-30356130,30356221-30356943 29 2.3
06_03_1053 + 27224824-27225618 29 3.0
03_06_0514 + 34450178-34450244,34450821-34451047,34451140-344512... 28 5.3
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 28 7.0
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 28 7.0
11_08_0100 + 28348518-28348640,28349294-28349371,28349837-283499... 27 9.3
11_01_0554 + 4381890-4382194,4382286-4382387,4382486-4383920 27 9.3
>05_01_0214 - 1615519-1616775
Length = 418
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/51 (58%), Positives = 35/51 (68%), Gaps = 4/51 (7%)
Frame = +1
Query: 487 SRNEEIDKRAR----RKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
S N D R R RKLI+A +LC+IFM E+VGG +NSLAI TDAAHL
Sbjct: 41 SSNSSKDARERMASMRKLIIAVILCIIFMAVEVVGGIKANSLAILTDAAHL 91
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 481 HRSRNEEIDKRARRKLIVASVLC-VIFMIGEIVGGYLSNSLAIATDAAH 624
H EE+ A ++ + V+ +G+ V GYLS S AIA DAAH
Sbjct: 64 HHHHGEEVGGEASERIFRLGLAADVVLTVGKAVTGYLSGSTAIAADAAH 112
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 33.1 bits (72), Expect = 0.19
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Frame = +1
Query: 19 EIDRT-TRAMSSHLINEKYHNDTKINTLNAFTDKNLVPLSGRYRSKSLSSDKLNKTNADR 195
E+D TRAMSS + H ++ T++ K+ + L S + K + AD
Sbjct: 411 EVDNPITRAMSSQSFGQD-HGSPQVMTVH----KSYIALGMSKGSVIVIPSKYSIHQADD 465
Query: 196 AAILEDVEVQYITDKSE-TPGCLVGNRDMVSGQLNINGYNDGHVSYGTDNQIRGRRVIFC 372
D ++ + ++ E T + G L + GYNDGH++ + +VI+
Sbjct: 466 T----DAKMLFFWNQGEKTQSSVTAMCFNQQGDLLLVGYNDGHMTIWDVQKGTAAKVIYG 521
Query: 373 VHGNPSTGCCAVIETSADGDDSE 441
H P C + ++ A DS+
Sbjct: 522 EHTAPVVHACFIRQSKAITGDSK 544
>08_02_0707 - 20212190-20214592
Length = 800
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +1
Query: 502 IDKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
+++R RK+ ++ +M E G++S+SL + +DA H+
Sbjct: 355 LNERKSRKIAAFLLINTAYMFVEFTSGFMSDSLGLISDACHM 396
>06_03_0548 + 22004338-22006746
Length = 802
Score = 30.7 bits (66), Expect = 1.00
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = -1
Query: 395 PVDGFPWTQNMTLRPRI*LSVPYDTCPSLYPFIFSCPLTISLFPTRQPGVSDLSVMYWTS 216
P D TQN+T R ++ +S P + F F +SLF + DLS++YW
Sbjct: 150 PTDTLLPTQNITARIKL-ISTNRLLAPGRFSFHFDDQYLLSLFYDEK----DLSLIYWPD 204
Query: 215 TSSNI 201
+ NI
Sbjct: 205 PTQNI 209
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 483 QIAKRRDRQESEKETHRGQ-RAVRHIHDRGNSRRVLVQQLSDSDRRRA 623
++ RD +E+E GQ +HD G +R L+ L+ +RRA
Sbjct: 245 EVTSDRDGRETESRVGVGQLERTNDVHDGGRKKRWLMSVLNPPPKRRA 292
>01_06_0574 + 30355217-30355460,30356006-30356130,30356221-30356943
Length = 363
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1
Query: 257 QPGVSDLSVMYWTSTSSNIAAR--SAFVLFNLSLDKLFDLYLPLNGTKFLSVNAFNVF 90
Q G S + +++ + AR SA +FN L L D L G F +NA+N+F
Sbjct: 222 QVGCSPNELARYSADGATCVARIDSAIQIFNRRLVGLVDEMNTLPGAHFTFINAYNIF 279
>06_03_1053 + 27224824-27225618
Length = 264
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 412 ETSADGDDSEKRNGSISEAERHCHRSRNEEIDKRARRKLIVASV 543
+ + GD +R + + E C R R + + R R L+VA V
Sbjct: 151 DDDSHGDSKRRRKAAAAAEEEECGRGRRQYEEMRDRYPLLVAEV 194
>03_06_0514 +
34450178-34450244,34450821-34451047,34451140-34451275,
34451818-34451951,34452037-34452142,34452602-34452687,
34453204-34453365,34453918-34454034,34454222-34454464
Length = 425
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 340 NQIRGRRVIFCVHGNPSTGCCAVIETSADG 429
+ + RV+F V GNP C +++ S DG
Sbjct: 177 HDLHAYRVLFDVDGNPRLSCFGLMKNSRDG 206
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Frame = +1
Query: 130 LSGRYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKSETPGCLVGNR----DMVSGQLN 297
+ R K S DKL KT + + ++V ++ +T C + + D++ G +
Sbjct: 201 IKSELRIKCSSDDKLEKTTMRKLGLKRTIDVIFVAYNDQTLPCFIFDGSVIFDLIPGDMV 260
Query: 298 IN 303
IN
Sbjct: 261 IN 262
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 424 DGDDSEKRNGSISEAERHCHRSRNEEIDKRARR 522
DGDD EK+ S + +++ +EE KR R+
Sbjct: 136 DGDDEEKKKRSRHDMKKNSRNDADEEKRKRKRK 168
>11_08_0100 +
28348518-28348640,28349294-28349371,28349837-28349977,
28350040-28350116,28350221-28350370,28350467-28350680
Length = 260
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 455 LPFLFSESSPSALVSMTAQHPVDGFPWTQNMTLR 354
+P F E SP LVS + Q V+ WT + T++
Sbjct: 225 MPTEFGEDSPYDLVSSSGQSTVNPSDWTFHRTIQ 258
>11_01_0554 + 4381890-4382194,4382286-4382387,4382486-4383920
Length = 613
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 459 DASVPFLRVIAVGAGLDDRTASRRRVPVDTKYDSPP 352
+A V +LR + + AGL D + R RVPV T D P
Sbjct: 43 NAGVEYLRELGL-AGLTDAGSFRARVPVVTHADLDP 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,700,799
Number of Sequences: 37544
Number of extensions: 305710
Number of successful extensions: 1158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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