Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d03f
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   4.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.9  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 317 PSLYPFIFSCPLTISLFPTRQPGVS 243
           PSLYP   + P + S   T +P VS
Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVS 417


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 492 KRRDRQESEKETHRGQRAVRHIH 560
           KRR R+ +     RG++  RHI+
Sbjct: 441 KRRQREAAGNCRKRGEKIARHIN 463


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 70  YHNDTKINTLNAFTDKNLV 126
           Y  DTK N LNA+    LV
Sbjct: 49  YRQDTKNNLLNAYVRFKLV 67


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 139 RYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKS 243
           R RSK  S DK  +  +    I+  +   YI++ S
Sbjct: 60  RERSKERSRDKRERERSKERKIISSLSNNYISNIS 94


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 139 RYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKS 243
           R RSK  S DK  +  +    I+  +   YI++ S
Sbjct: 60  RERSKERSRDKRERERSKERKIISSLSNNYISNIS 94


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 440 SESSPSALVSMTAQHPVDG 384
           S   PSA+++M   HP+ G
Sbjct: 345 SAGLPSAILAMRLSHPLHG 363


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -1

Query: 257 QPGVSDLSVMYWTSTSSNIAARSAFVLFNLSLDKLF 150
           QPGV+   V  W    ++      + +FN    K F
Sbjct: 653 QPGVTAFIVTSWLGYMNSFVNPVIYTVFNPEFRKAF 688


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 604 SLSCWTSTRLL 572
           SL+CW   RLL
Sbjct: 324 SLACWNENRLL 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.132    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,662
Number of Sequences: 438
Number of extensions: 3623
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)