Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d03f
(629 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 52 2e-07
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 52 2e-07
At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin... 52 3e-07
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin... 52 3e-07
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 43 2e-04
At2g29410.1 68415.m03574 zinc transporter, putative similar to z... 41 8e-04
At2g04620.1 68415.m00470 cation efflux family protein potential ... 36 0.029
At4g03440.1 68417.m00471 ankyrin repeat family protein contains ... 29 1.9
At1g16500.1 68414.m01973 expressed protein 29 2.5
At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family pr... 29 2.5
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 28 4.4
At4g18375.2 68417.m02727 KH domain-containing protein contains s... 28 5.9
At4g18375.1 68417.m02726 KH domain-containing protein contains s... 28 5.9
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 7.8
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 27 7.8
At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h... 27 7.8
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad... 27 7.8
At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein co... 27 7.8
At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha-D-gl... 27 7.8
At2g05090.1 68415.m00534 hypothetical protein includes At5g37080... 27 7.8
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +1
Query: 520 RKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
RKL++A +LC IF++ E+VGG +NSLAI TDAAHL
Sbjct: 72 RKLLIAVLLCAIFIVVEVVGGIKANSLAILTDAAHL 107
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 52.4 bits (120), Expect = 2e-07
Identities = 23/36 (63%), Positives = 30/36 (83%)
Frame = +1
Query: 520 RKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
RKL++A +LC IF++ E+VGG +NSLAI TDAAHL
Sbjct: 111 RKLLIAVLLCAIFIVVEVVGGIKANSLAILTDAAHL 146
>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +1
Query: 520 RKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
RKL +A VLC++FM E+VGG +NSLAI TDAAHL
Sbjct: 56 RKLCIAVVLCLVFMSVEVVGGIKANSLAILTDAAHL 91
>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; member of the cation diffusion
facilitator (CDF) family, or cation efflux (CE) family,
PMID:11500563
Length = 398
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/36 (66%), Positives = 29/36 (80%)
Frame = +1
Query: 520 RKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
RKL +A VLC++FM E+VGG +NSLAI TDAAHL
Sbjct: 56 RKLCIAVVLCLVFMSVEVVGGIKANSLAILTDAAHL 91
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +1
Query: 493 NEEIDKRAR--RKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
+ + KRA RKL VLC++FM E+V G +NSLAI DAAHL
Sbjct: 20 SSDAKKRAASMRKLCFVVVLCLLFMSIEVVCGIKANSLAILADAAHL 66
>At2g29410.1 68415.m03574 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 375
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +1
Query: 469 ERHCHRSRNEEIDKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
+ HC E + + R+L L +I M +IVGG+ +NSLA+ TDAAHL
Sbjct: 41 QEHCVSETKER--EESTRRLSSLIFLYLIVMSVQIVGGFKANSLAVMTDAAHL 91
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 35.5 bits (78), Expect = 0.029
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 502 IDKRARRKLIVASVLCVIFMIGEIVGGYLSNSLAIATDAAHL 627
+ ++ RK+ + ++ +M+ E V G++SNSL + +DA H+
Sbjct: 412 LSEKKSRKIALFLLINTAYMVVEFVAGFMSNSLGLISDACHM 453
>At4g03440.1 68417.m00471 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 751
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Frame = +1
Query: 139 RYRSKSLSSDKLNKTNADRAAILEDVEVQYITDKSE-TPGCLV---GNRDMVSGQLNING 306
R +SKSLS++ + + + +V ++ +K E +P L GN +V+ LN +
Sbjct: 237 RSKSKSLSNESTHLMETAACLVNANQDVSFLANKDEISPLYLAVEAGNVSLVNAMLNSHV 296
Query: 307 YNDGHVSYGTDNQIRGRR 360
N ++ Q++GR+
Sbjct: 297 NNVQDKTFNLATQLKGRK 314
>At1g16500.1 68414.m01973 expressed protein
Length = 259
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 19 EIDRTTRAMSSHLINEKYHNDTKINTLNAFTDKNLVPLSGRYRSKSLSS 165
+ + T+ + SSH + +H D T+ F D N+ P+S ++ +K L S
Sbjct: 85 QCNSTSSSSSSHH-HHHHHEDQTNQTVPRFQDLNVPPISDKFPAKPLLS 132
>At1g12860.1 68414.m01494 basic helix-loop-helix (bHLH) family
protein / F-box family protein contains Pfam profiles:
PF00646 F-box domain, PF00010 helix-loop-helix
DNA-binding domain
Length = 828
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 492 KRRDRQESEKETHRGQRAVRH-IHDRGNSRRVLVQQLSDSDRRRAP 626
+++ + EK+ QR R I +RGN +R L+ LS RRR P
Sbjct: 12 EKKSTMKKEKQAIASQRNRRRVIKNRGNGKR-LIASLSQRKRRRIP 56
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 385 PSTGCCAVIETSADGDDSEKR---NGSISEAERHCHRSRNEEIDKR 513
PST + E+S+ DD +R +GS S++ R HRSR++ KR
Sbjct: 296 PSTNSSSDTESSSSSDDGYRRRLRDGSRSQSPR--HRSRSQSPRKR 339
>At4g18375.2 68417.m02727 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 606
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 460 SEAERHCHRSRNEEIDKRARRKLIVASVLCVIFMIGEIVG--GYLSNSLAIATDA 618
+ +E + ++ R DK R +L+V +LC I ++G ++G G + N++ T A
Sbjct: 13 NNSESNRNQKRRISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKA 67
>At4g18375.1 68417.m02726 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 532
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 460 SEAERHCHRSRNEEIDKRARRKLIVASVLCVIFMIGEIVG--GYLSNSLAIATDA 618
+ +E + ++ R DK R +L+V +LC I ++G ++G G + N++ T A
Sbjct: 13 NNSESNRNQKRRISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKA 67
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 492 KRRDRQESEKETHRGQRAVRHIHDRGNSRRVLVQQLSDSDRRR 620
KR D QES K+ HRG+ + + ++R D DR R
Sbjct: 860 KREDSQESSKKRHRGENKSQSPPRKSSTRERDHDLGRDRDRER 902
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 471 KALSQIAKRRDRQESEKETHRGQRAVRHIHDRGNSRRVLVQQLSDSDR 614
K L+ ++ + +E EKE ++ ++ HD N R+L + SD +R
Sbjct: 201 KKLNLLSFGEEAEEEEKELAVVKQKIKSSHDVLNDPRLLKAEASDKER 248
>At4g13940.1 68417.m02157 adenosylhomocysteinase /
S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
identical to SP|O23255 Adenosylhomocysteinase (EC
3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
(AdoHcyase) {Arabidopsis thaliana}; strong similarity to
SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
sylvestris}
Length = 485
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 334 TDNQIRGRRVIFCVHGNPSTGCCAVIETS 420
TD I G+ + C +G+ GC A ++T+
Sbjct: 256 TDVMIAGKVAVICGYGDVGKGCAAAMKTA 284
>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
S-adenosyl-L-homocysteine hydrolase, putative /
AdoHcyase, putative strong similarity to
SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
(S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
{Nicotiana sylvestris}; contains Pfam profile PF00670:
S-adenosyl-L-homocysteine hydrolase, NAD binding domain
Length = 485
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 334 TDNQIRGRRVIFCVHGNPSTGCCAVIETS 420
TD I G+ + C +G+ GC A ++T+
Sbjct: 256 TDVMIAGKVAVICGYGDVGKGCAAAMKTA 284
>At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 637
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 148 SKSLSSDKLNKTNADRAAILEDVEVQYITDK 240
SKS S +NKT + A I+E +Y++DK
Sbjct: 26 SKSHESTDVNKTIDNAAEIIEKWNTEYVSDK 56
>At2g32290.1 68415.m03947 beta-amylase, putative /
1,4-alpha-D-glucan maltohydrolase, putative similar to
beta-amylase GI:13560977 from [Castanea crenata]
Length = 577
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 461 EMLPFLFSESSPSALVSMTAQHPVDGFPWTQ--NMTLRP 351
E+LP S + S + M P D FPW +M++RP
Sbjct: 522 ELLPLERSRNDESLEMFMEETEPFDPFPWLDETDMSIRP 560
>At2g05090.1 68415.m00534 hypothetical protein includes At5g37080,
At5g37170, At2g05090
Length = 572
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 43 MSSHLINEKYHNDTKINTLNAFTDKNLVPLSGRYRSKSLS 162
+ H I K+H K+ + NL P +G+Y+ SLS
Sbjct: 56 LRKHYIG-KFHRSLKVGDWKIIDNFNLSPSTGKYKISSLS 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.132 0.376
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,493
Number of Sequences: 28952
Number of extensions: 241943
Number of successful extensions: 872
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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