Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02r
         (757 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6LJY5 Cluster: ATP-dependent DNA helicase, RecQ family...    33   5.8  
UniRef50_Q9W3U7 Cluster: CG33691-PA, isoform A; n=2; Drosophila ...    33   5.8  
UniRef50_UPI00006CAA53 Cluster: Protein kinase domain containing...    33   7.6  

>UniRef50_A6LJY5 Cluster: ATP-dependent DNA helicase, RecQ family;
           n=1; Thermosipho melanesiensis BI429|Rep: ATP-dependent
           DNA helicase, RecQ family - Thermosipho melanesiensis
           BI429
          Length = 1156

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
 Frame = +1

Query: 523 LKFLTIRDKNSSCIPNTTLI---RRNKFKNKPLCKK---ESTFQYSFNTQNRHRRHTEQH 684
           LK + ++      IP +  +   +R K+  K L KK   E+ F Y  N +NR  +H E+ 
Sbjct: 105 LKNVNVKKPVICAIPASNFVDTEKRFKYFTKTLSKKLNFENGFSYIQNKKNRRNKHFEKF 164

Query: 685 SRPILYYHSFIKHQLYXEYIXLY 753
              I+ Y S  K ++  + I L+
Sbjct: 165 QGNIIEYISINKKKIKGKTILLF 187


>UniRef50_Q9W3U7 Cluster: CG33691-PA, isoform A; n=2; Drosophila
           melanogaster|Rep: CG33691-PA, isoform A - Drosophila
           melanogaster (Fruit fly)
          Length = 758

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 514 NIPLKFLTIRDKNSSCIPNTTLIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTEQHSRP 693
           N+PL  L++   NS  + + + +RRN         +++  Q S N  N     T+Q S P
Sbjct: 448 NLPLAILSLASNNSGGVSSNSGVRRNNNNTNSNYGRQTHSQSSSNHSNTQTTSTQQQSTP 507


>UniRef50_UPI00006CAA53 Cluster: Protein kinase domain containing
           protein; n=1; Tetrahymena thermophila SB210|Rep: Protein
           kinase domain containing protein - Tetrahymena
           thermophila SB210
          Length = 840

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 568 NTTLIRRNKFKNKPLCKKESTFQYSFN-TQNRHRRHTEQHSRPILYYHSFIKHQLY 732
           N+ L   N    +   K+ +T  YSFN TQ+   ++ +QH +PI Y  S  K+  Y
Sbjct: 502 NSGLNNSNTSIGQSWLKQNNTNYYSFNQTQHSFNQNEQQHGQPIKYIESNNKNSQY 557


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,086,600
Number of Sequences: 1657284
Number of extensions: 11008377
Number of successful extensions: 19309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19300
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)