Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02r
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    29   0.72 
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   5.0  
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    25   8.8  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   8.8  

>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 499 KSLLFNIPLKFLTIRDKNSSCIPNTTLIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTE 678
           K+++ N   + L+ +D+     P    I R K +     K ES+ +   +  NRH RH  
Sbjct: 148 KTIIQNEVEQTLSPKDEKDLLDPMRDYIHREKRRK---LKHESSDRSDKSDSNRHSRHHR 204

Query: 679 QHSR 690
           +HSR
Sbjct: 205 RHSR 208


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 517 C*ITRIFKTLDPGNYEQVVCVQIKLLHTLSN 425
           C I RI KTL+   Y+++  V    L+T+SN
Sbjct: 400 CIILRIIKTLEDFTYQRMKTVLDDELYTISN 430


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 598 KNKPLCKKES-TFQYSFNTQNRHRRHT 675
           KN+PL  + S TFQ + N QN   RHT
Sbjct: 217 KNEPLVHERSHTFQQT-NPQNNFHRHT 242


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 577 LIRRNKFKNKPLCKKE 624
           LIRRN F + PLCK++
Sbjct: 374 LIRRNHFLSFPLCKEQ 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,690,616
Number of Sequences: 5004
Number of extensions: 51723
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)