Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02r
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)                   34   0.14 
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)         29   3.1  
SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)          28   9.4  

>SB_48133| Best HMM Match : RYDR_ITPR (HMM E-Value=2)
          Length = 671

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +2

Query: 185 FKYLYKLASAKRYRLNATLS*MVTT-VSLHEHNQVRKLISRLIPRHFK 325
           +  LY L+ +   R+NA LS MVT  VS+H  N++ +L +R  P+ +K
Sbjct: 383 YSRLYDLSRSCPVRINALLSHMVTDGVSIHAANELLRLATRQTPQTWK 430


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 460 TQPVHNSLDLMS*KSLLFNIPLKFLTIRDKNSSCIPNTTLIRRNKFK-NKPLCKKESTFQ 636
           T+ +H + +L+     LFN PL    +  K  +C+PNT +      + N PL    S + 
Sbjct: 463 TEDIHINDELVEEGFALFNPPLSPPPVTQKLDACVPNTKVTESTPSRYNTPL-PTPSRYN 521

Query: 637 YSFNTQNRHRRHTEQHSR 690
             ++T +R+       SR
Sbjct: 522 TPWSTPSRYNTPWSTPSR 539


>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
          Length = 353

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 508 TRIFKTLDPGNYEQVVCVQIKL 443
           TR+F++ D G+Y  +VC  +KL
Sbjct: 254 TRVFRSADVGSYHYLVCATVKL 275


>SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)
          Length = 375

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 595 FKNKPLCKKESTFQYSFNTQNRHRRHTEQHSRPILYYHSFIKHQLYXEYI 744
           +KNK  C KE         Q RH  H  +H RP   +H    H+   EY+
Sbjct: 205 YKNKMTCYKEK------REQGRHHGHRRKHHRP---HHHRHHHRRLPEYL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,221,809
Number of Sequences: 59808
Number of extensions: 357761
Number of successful extensions: 622
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)