Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02r
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated p...    29   2.7  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    29   2.7  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    29   2.7  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    29   2.7  
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    29   4.7  
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    29   4.7  

>U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated
           protein 2, isoform d protein.
          Length = 286

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 577 LIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTEQHSRPILYYH--SFIKHQLY 732
           +IRRN++      +     QY  + Q + + H +QHS+ + + H  ++  H  Y
Sbjct: 39  IIRRNRYNTMEHSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQY 92


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 577  LIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTEQHSRPILYYH--SFIKHQLY 732
            +IRRN++      +     QY  + Q + + H +QHS+ + + H  ++  H  Y
Sbjct: 1679 IIRRNRYNTMEHSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQY 1732


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 577  LIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTEQHSRPILYYH--SFIKHQLY 732
            +IRRN++      +     QY  + Q + + H +QHS+ + + H  ++  H  Y
Sbjct: 1780 IIRRNRYNTMEHSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQY 1833


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 577  LIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTEQHSRPILYYH--SFIKHQLY 732
            +IRRN++      +     QY  + Q + + H +QHS+ + + H  ++  H  Y
Sbjct: 1780 IIRRNRYNTMEHSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQY 1833


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9b protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 568 NTTLIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTE 678
           NT     +  KN+P+ +KE  F Y  ++ N  R+H E
Sbjct: 592 NTLRFVVSNTKNQPILEKEIPFLYKDDSMNNVRKHLE 628


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y110A7A.9a protein.
          Length = 1019

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 568 NTTLIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTE 678
           NT     +  KN+P+ +KE  F Y  ++ N  R+H E
Sbjct: 703 NTLRFVVSNTKNQPILEKEIPFLYKDDSMNNVRKHLE 739


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,606,544
Number of Sequences: 27780
Number of extensions: 280394
Number of successful extensions: 537
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)