Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02r
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   7.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   7.1  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = +1

Query: 514 NIPLKFLTIRDKNSSCIPNT-TLIRRNKFKNKP 609
           N+P  F  I D NSS  P    +I  N  K  P
Sbjct: 316 NVPFNFKFITDANSSSTPEQFKVIIDNWIKGTP 348


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 643 FNTQNRHRRHTEQHSRPILYYHSFIKHQ 726
           F+T  +       + R I YYHS+  HQ
Sbjct: 409 FSTSMKDPAFYRIYKRIIDYYHSYKMHQ 436


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 643 FNTQNRHRRHTEQHSRPILYYHSFIKHQ 726
           F+T  +       + R I YYHS+  HQ
Sbjct: 409 FSTSMKDPAFYRIYKRIIDYYHSYKMHQ 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,088
Number of Sequences: 438
Number of extensions: 3598
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)