Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02r
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    32   0.47 
At5g17410.2 68418.m02043 tubulin family protein similar to spind...    29   3.3  
At5g17410.1 68418.m02042 tubulin family protein similar to spind...    29   3.3  
At1g03780.2 68414.m00358 targeting protein-related similar to mi...    29   4.4  
At1g03780.1 68414.m00359 targeting protein-related similar to mi...    29   4.4  

>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
            other kinesin-like proteins of A. thaliana: F02P16.12
            (PID:g2191180), katA (D11371), katB (D21137), and katC
            (D21138); contains non-consensus AT-AC splice sites at
            intron 10
          Length = 1087

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 535  TIRDKNSSCIPNTTLIRRNKFKNK-PLCKKESTFQYSFNTQNRHRRHTEQHSRPILYYHS 711
            TI+ +N   +     + R  F  + P+ K  ST   + + +N HR HT+  S     +  
Sbjct: 841  TIKSRNKPDVTQNLPVSRTPFPARVPVVKSFSTVPLNPSAENNHRLHTDNSSEAFQNHQK 900

Query: 712  FIKHQLYXE 738
                +L+ E
Sbjct: 901  LSARKLFPE 909


>At5g17410.2 68418.m02043 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 679

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -3

Query: 131 GTINWLENKCSSMI*KNSIRNVXTRNTKCLDDSTSTSVERXI 6
           G +N L+++  +M   NS+R++  + T+C  ++  + +ER +
Sbjct: 206 GVLNLLQSQAKAMAGDNSVRSLLEKMTECASNAYLSILERWV 247


>At5g17410.1 68418.m02042 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 678

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -3

Query: 131 GTINWLENKCSSMI*KNSIRNVXTRNTKCLDDSTSTSVERXI 6
           G +N L+++  +M   NS+R++  + T+C  ++  + +ER +
Sbjct: 205 GVLNLLQSQAKAMAGDNSVRSLLEKMTECASNAYLSILERWV 246


>At1g03780.2 68414.m00358 targeting protein-related similar to
           microtubule-associated protein / targeting protein for
           Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
           Restricted expression proliferation associated protein
           100 (p100) (Differentially expressed in lung cells 2)
           (DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
           (C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
           sapiens}
          Length = 725

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 538 IRDKNSSCIPNTTLIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTEQHSRPILYYHSFI 717
           +R K+S+ +    L +  KFK +P+ KKE   Q +    N+H   +   S  +   H+  
Sbjct: 334 LRVKSSAELEEEMLAKIPKFKARPVNKKEFHLQ-TMARANQHAETSSIASTEVSKQHNDQ 392

Query: 718 KHQL 729
           KH L
Sbjct: 393 KHHL 396


>At1g03780.1 68414.m00359 targeting protein-related similar to
           microtubule-associated protein / targeting protein for
           Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
           Restricted expression proliferation associated protein
           100 (p100) (Differentially expressed in lung cells 2)
           (DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
           (C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
           sapiens}
          Length = 687

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 538 IRDKNSSCIPNTTLIRRNKFKNKPLCKKESTFQYSFNTQNRHRRHTEQHSRPILYYHSFI 717
           +R K+S+ +    L +  KFK +P+ KKE   Q +    N+H   +   S  +   H+  
Sbjct: 334 LRVKSSAELEEEMLAKIPKFKARPVNKKEFHLQ-TMARANQHAETSSIASTEVSKQHNDQ 392

Query: 718 KHQL 729
           KH L
Sbjct: 393 KHHL 396


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,382,068
Number of Sequences: 28952
Number of extensions: 244497
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)