Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d02f
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1495 + 26983415-26984797 37 0.010
01_01_1189 + 9454042-9455655 37 0.013
04_04_1469 + 33815965-33816250,33816268-33816335,33816441-338165... 36 0.029
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835... 34 0.068
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 32 0.27
02_05_0596 + 30239186-30239567,30239642-30239742,30240680-302407... 32 0.36
08_02_0042 - 11542707-11542730,11542936-11543011,11543316-115434... 31 0.84
01_06_0832 + 32291454-32291537,32291584-32291661,32292081-322928... 30 1.5
06_03_0827 - 25122413-25122430,25122970-25123063,25124210-25124535 28 4.5
03_01_0628 + 4610827-4611252,4611348-4611806,4611980-4612084 28 4.5
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 28 5.9
>07_03_1495 + 26983415-26984797
Length = 460
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 FDYDKMYPVAVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADA-LAA 179
F D+ A+ E LE M LVP + E FW YFYR+ + Q +A A L
Sbjct: 193 FSVDERSGEIEALCYESDALEGMVEKLVPGTVESEVFWARYFYRVHRLKQQEDARAKLVK 252
Query: 180 RHSSADDSQ 206
R +A++ +
Sbjct: 253 RVFAAEEDE 261
>01_01_1189 + 9454042-9455655
Length = 537
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 3 FDYDKMYPVAVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEA-DALAA 179
F D+ ++ E P LE LVP V+ + FW YF+ + + QA + L
Sbjct: 309 FRIDERKEEIEGVLKESPGLESFVERLVPSVVDYDMFWCRYFFAVDKLRQAEDVRTKLVT 368
Query: 180 RHSSADDSQ 206
R S +D +
Sbjct: 369 RAMSKEDEE 377
>04_04_1469 +
33815965-33816250,33816268-33816335,33816441-33816538,
33817449-33817608
Length = 203
Score = 35.5 bits (78), Expect = 0.029
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 30 AVAIMTEDPNLEKMRFDLVPKVITEENFWRNYF 128
AV ++++ L K+R+DL P+ + ++ FWR YF
Sbjct: 110 AVLVLSKAKELAKIRYDLCPRHMKDKQFWRIYF 142
>11_06_0080 -
19880319-19880957,19881800-19881948,19882266-19883589,
19883766-19883953,19884034-19884499
Length = 921
Score = 34.3 bits (75), Expect = 0.068
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 30 AVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADALAARHSSADDSQ 206
A+A+ + P L +R +L P ++E FW+ YF L ++AD L+ ++ +
Sbjct: 167 ALAVESVAPELADLRIELCPSHMSEGCFWKIYFVLLHPKLSKDDADLLSTPQQEKEEKE 225
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 32.3 bits (70), Expect = 0.27
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 30 AVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADALA 176
A+AI P L +R +L P ++EE FW+ YF L ++A+ L+
Sbjct: 387 ALAIEQLAPRLAALRIELCPIHMSEECFWKIYFVLLHPRLNKHDAELLS 435
>02_05_0596 +
30239186-30239567,30239642-30239742,30240680-30240777,
30241448-30241656,30241754-30241806,30242069-30242137
Length = 303
Score = 31.9 bits (69), Expect = 0.36
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 30 AVAIMTEDPNLEKMRFDLVPKVITEENFWRNYF 128
A +++ + K R++L P+ + E FWR YF
Sbjct: 153 ATLVLSAVKEISKFRYELCPRYMKERKFWRVYF 185
>08_02_0042 -
11542707-11542730,11542936-11543011,11543316-11543425,
11544562-11544747,11545421-11547697
Length = 890
Score = 30.7 bits (66), Expect = 0.84
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -2
Query: 224 SPWCLSLGVVGGGMARREGVGLVGLA-DQRQAVEVVPPKVLFSDNF-WHKIKAH 69
+P ++ G++ G+AR E G VG+ + + + V P +V++++ WH K H
Sbjct: 288 TPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGH 341
>01_06_0832 +
32291454-32291537,32291584-32291661,32292081-32292804,
32294259-32294446,32294623-32294682,32295516-32295959
Length = 525
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 12 DKMYPVAVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADALA 176
D Y A+AI P+L +R +L ++E FW+ YF L +A+ L+
Sbjct: 301 DTQYGHALAIERVVPSLSYLRTELCSTNMSEACFWKIYFVLLHSKLSKQDAELLS 355
>06_03_0827 - 25122413-25122430,25122970-25123063,25124210-25124535
Length = 145
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = -2
Query: 236 RLSRSPWCLSLGVVGGGMARREGVGLVGLADQRQA 132
RL+ SP C + GG ARR GVG VG +R A
Sbjct: 36 RLAVSPRCREVASPGGEGARRGGVG-VGRGGERAA 69
>03_01_0628 + 4610827-4611252,4611348-4611806,4611980-4612084
Length = 329
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = -2
Query: 251 CYDESRLSRSPWCLSLGVVGGGMARREGVGLVGLADQRQAVEVVPPKVLFSDN 93
C +S PWC L GGG E G+ DQ Q V +V DN
Sbjct: 17 CGRDSPAYGMPWCDVLAAAGGGGGFGEFYGVDEWDDQLQVASVDEWEVASKDN 69
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 9 YDKMYPVAVAIMTEDPNLEKMRFDL 83
YD++ ++ +MTE+ NLEK+ D+
Sbjct: 501 YDRLAMESLEVMTEEQNLEKLSLDV 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,549,040
Number of Sequences: 37544
Number of extensions: 194190
Number of successful extensions: 458
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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