Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02f
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   8e-15
SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)           30   1.5  

>SB_56826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 33/59 (55%), Positives = 47/59 (79%)
 Frame = +3

Query: 3   FDYDKMYPVAVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADALAA 179
           ++ + M+PVA+A + +D NLE+MRF LVPK ++EE FWRNYFYR+SLI Q+ +  +LAA
Sbjct: 113 YEGETMFPVALATLQKDENLEQMRFKLVPKKVSEERFWRNYFYRVSLIKQSTQLTSLAA 171


>SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)
          Length = 551

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 490 FLIINHYINIYRYMCVSANTMKVSDGIILSR 398
           FL++++ IN Y Y  VS+N+    D ++L R
Sbjct: 411 FLLVSYGINAYWYRMVSSNSCSPGDPLVLER 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,785,095
Number of Sequences: 59808
Number of extensions: 239087
Number of successful extensions: 505
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)