Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02f
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81036-3|CAB02741.1|  357|Caenorhabditis elegans Hypothetical pr...    60   1e-09
AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical ...    36   0.020
AF038615-1|AAB94149.3|  532|Caenorhabditis elegans Hypothetical ...    35   0.046
AC006638-10|AAK85488.1|  242|Caenorhabditis elegans Hypothetical...    28   4.0  
AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF332207-1|AAK17978.1|  378|Caenorhabditis elegans nuclear recep...    27   9.3  
AF016445-12|AAC69062.1|  374|Caenorhabditis elegans Nuclear horm...    27   9.3  
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z81036-3|CAB02741.1|  357|Caenorhabditis elegans Hypothetical
           protein C16C2.4 protein.
          Length = 357

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 23/51 (45%), Positives = 34/51 (66%)
 Frame = +3

Query: 3   FDYDKMYPVAVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQA 155
           + Y++   +A  ++  DPNL  +RF LVPK + E  FW+NYFYR+ LI Q+
Sbjct: 178 YTYEQQQAMATLLLKHDPNLANVRFQLVPKQVKENQFWQNYFYRIGLIRQS 228


>AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.6 protein.
          Length = 446

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 39  IMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSL 143
           ++  +P+L +M  +LVP  +  E FW+ YFY + +
Sbjct: 310 LLANNPSLRQMFANLVPGSVNHETFWKRYFYAIEV 344


>AF038615-1|AAB94149.3|  532|Caenorhabditis elegans Hypothetical
           protein R02D3.3 protein.
          Length = 532

 Score = 34.7 bits (76), Expect = 0.046
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 36  AIMTEDPNLEKMRFDLVPKVITEENFWRNYF 128
           AI +  P ++K   +LVP  ++EENFW+ +F
Sbjct: 207 AIYSTYPAVQKKNLELVPHEMSEENFWKKFF 237


>AC006638-10|AAK85488.1|  242|Caenorhabditis elegans Hypothetical
           protein F41G4.8 protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 6   DYDKMYPVAVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYR 134
           D D ++P +V  +T D NL+ + F L+ ++  +  F R YF R
Sbjct: 118 DQDNIWP-SVYNLTRD-NLDCLAFTLLQRIYDKSEFTRKYFAR 158


>AL021482-2|CAA16339.1| 1003|Caenorhabditis elegans Hypothetical
           protein Y39A1B.2 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 257 CYCYDESRLSRSPWCLSLGVVGGGMARREGVGLVGLADQ-RQAVEVVPPKVLFS 99
           C C    R SR PW    GV+   MA    VG++ LA     +V    P ++FS
Sbjct: 311 CCCVFSWRRSR-PWLAIGGVISAAMAIASAVGILLLAGYGMTSVAYSMPFIVFS 363


>AF332207-1|AAK17978.1|  378|Caenorhabditis elegans nuclear receptor
           NHR-57 protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 6   DYDKMYPVAVAIMTEDPNLEKMRFDL-VPKV 95
           DYD+M P    +M     L K R+DL  PK+
Sbjct: 125 DYDQMTPTLCGVMESYQKLYKKRYDLHAPKL 155


>AF016445-12|AAC69062.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 57 protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 6   DYDKMYPVAVAIMTEDPNLEKMRFDL-VPKV 95
           DYD+M P    +M     L K R+DL  PK+
Sbjct: 121 DYDQMTPTLCGVMESYQKLYKKRYDLHAPKL 151


>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
            protein Y37B11A.2 protein.
          Length = 1133

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 263  EWCYCYDESRLSRSPWCL 210
            E C+  D SR+ ++PWC+
Sbjct: 1039 EQCFVSDCSRIGKTPWCI 1056


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,507,626
Number of Sequences: 27780
Number of extensions: 185362
Number of successful extensions: 420
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)