Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02f
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   1.6  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   2.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.8  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   6.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.5  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   8.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.6  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 58  TLRRCALILCQKLSLKR 108
           T + C  +LC K SLKR
Sbjct: 7   TCQLCGKVLCSKASLKR 23


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 514 QSKLEYNRFLIINHYINIYRYMCVSANTMKV 422
           + +  YNR+L     I I   +C++   +K+
Sbjct: 24  EKEFHYNRYLTRRRRIEIAHALCLTERQIKI 54


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 514 QSKLEYNRFLIINHYINIYRYMCVSANTMKV 422
           + +  YNR+L     I I   +C++   +K+
Sbjct: 286 EKEFHYNRYLTRRRRIEIAHALCLTERQIKI 316


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = -3

Query: 535 RF*ISGFQSKLEYNRFLIINHYINIYRYMCVSANTMKV 422
           RF     + +  YN +L     I I   +C++   +K+
Sbjct: 17  RFQTLELEKEFHYNHYLTRRRRIEIAHALCLTERQIKI 54


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 3   FDYDKMYPVAVAIMTEDPNLEKMRFDLVP 89
           +DY K YP  V        L  +R+D VP
Sbjct: 63  YDYTKNYPFDVDQWHNKTFLAVIRYDGVP 91


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 194  GGGMARREGVGLVGLADQRQAVEVVPPKVLFSDNFWHK 81
            GG +A   G+G +G A +  A  + P   L     +H+
Sbjct: 1707 GGSLAGLGGLGGLGGAAEASAAGLHPNNTLLHSFMYHE 1744


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 194  GGGMARREGVGLVGLADQRQAVEVVPPKVLFSDNFWHK 81
            GG +A   G+G +G A +  A  + P   L     +H+
Sbjct: 1703 GGSLAGLGGLGGLGGAAEASAAGLHPNNTLLHSFMYHE 1740


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/31 (22%), Positives = 16/31 (51%)
 Frame = -3

Query: 514 QSKLEYNRFLIINHYINIYRYMCVSANTMKV 422
           + +  +NR+L     I I   +C++   +K+
Sbjct: 24  EKEFHFNRYLTRRRRIEIAHALCLTERQIKI 54


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 3   FDYDKMYPVAVAIMTEDP 56
           + Y K Y +AVA M   P
Sbjct: 320 YKYSKRYKMAVAFMLSHP 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,057
Number of Sequences: 438
Number of extensions: 2396
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)