Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d02f
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24820.1 68416.m03114 BSD domain-containing protein contains ...    38   0.004
At1g03350.1 68414.m00314 BSD domain-containing protein contains ...    38   0.006
At5g65910.1 68418.m08296 BSD domain-containing protein contains ...    37   0.008
At1g26300.2 68414.m03207 BSD domain-containing protein contains ...    35   0.033
At1g26300.1 68414.m03206 BSD domain-containing protein contains ...    35   0.033
At1g69030.1 68414.m07898 BSD domain-containing protein contains ...    34   0.057
At3g61420.1 68416.m06879 transcription factor-related low simila...    34   0.075
At4g13110.1 68417.m02043 BSD domain-containing protein contains ...    33   0.17 
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    32   0.30 
At1g55750.1 68414.m06383 transcription factor-related low simila...    32   0.30 
At5g03435.1 68418.m00297 C2 domain-containing protein contains P...    29   2.1  
At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4 f...    28   3.7  
At1g10720.1 68414.m01221 BSD domain-containing protein contains ...    27   6.5  
At4g39160.1 68417.m05546 myb family transcription factor contain...    27   8.7  
At4g19900.1 68417.m02916 glycosyl transferase-related contains P...    27   8.7  
At2g44700.1 68415.m05563 kelch repeat-containing F-box family pr...    27   8.7  

>At3g24820.1 68416.m03114 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 186

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 30  AVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADAL 173
           AV ++++   L ++RF L P+V+ E  FWR YF  +  I    E  A+
Sbjct: 99  AVLVLSKSKELSQLRFKLCPRVLKEHQFWRIYFQLVRKIVAKYEVLAI 146


>At1g03350.1 68414.m00314 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 470

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 39  IMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADA-LAARHSSADDSQ 206
           ++ E+ +++ +   +VP ++  E FW  YFYR++ + QA +  A L  R  S DD +
Sbjct: 195 LLEENGDMKGVYKRVVPSMVDHETFWFRYFYRVNKLKQAEDLRANLVKRAISLDDEE 251


>At5g65910.1 68418.m08296 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 432

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 12  DKMYPVAVAIMTEDPNLEKMRFDLVPKVITEENFWRNYF 128
           D  Y  A+A+    P+L  +R +L P+ +TE  FWR YF
Sbjct: 182 DAQYEHALAVERLAPSLASLRIELCPEYMTENCFWRIYF 220


>At1g26300.2 68414.m03207 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 213

 Score = 35.1 bits (77), Expect = 0.033
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 30  AVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLS 140
           A  ++T    + K+R++L P+ + E  FWR YF  +S
Sbjct: 172 ATLVLTSVKQISKLRYELCPRFMKERRFWRIYFTLVS 208


>At1g26300.1 68414.m03206 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 316

 Score = 35.1 bits (77), Expect = 0.033
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 30  AVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLS 140
           A  ++T    + K+R++L P+ + E  FWR YF  +S
Sbjct: 172 ATLVLTSVKQISKLRYELCPRFMKERRFWRIYFTLVS 208


>At1g69030.1 68414.m07898 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 328

 Score = 34.3 bits (75), Expect = 0.057
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 30  AVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLS 140
           A  ++     + K+R++L P+V+ E  FWR YF  +S
Sbjct: 191 ATLVLGSVKQISKLRYELCPRVMKERRFWRIYFTLVS 227


>At3g61420.1 68416.m06879 transcription factor-related low
           similarity to SP|Q9DBA9 TFIIH basal transcription factor
           complex p62 subunit {Mus musculus}; contains Pfam
           profile PF03909: BSD domain
          Length = 566

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 39  IMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADALAARHSSADDSQA 209
           I  E P + +   + VPK +TE++FW  YF    L    N   A+AA  ++ D+  A
Sbjct: 177 IFAEKPAVRQAFINYVPKKMTEKDFWTKYFRAEYLYSTKN--TAVAAAEAAEDEELA 231


>At4g13110.1 68417.m02043 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 316

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 33  VAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADA-LAARHSSADDSQ 206
           V ++  +  ++++  ++VP  +  E FWR Y+Y++  + Q  EA   L  R  S ++ +
Sbjct: 172 VELINGNKGVKEIYEEIVPVEVDAETFWRRYYYKVYKLEQVEEARVKLVKRAISGEEDE 230


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 12  DKMYPVAVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADALA 176
           D  Y  A+A+     +L  +R +L P  ++E  FWR YF  +  I   ++A  L+
Sbjct: 202 DAQYEHALAVENLASSLAALRIELCPAYMSEYCFWRIYFVLVHPIFSKHDALTLS 256


>At1g55750.1 68414.m06383 transcription factor-related low
           similarity to SP|Q9DBA9 TFIIH basal transcription factor
           complex p62 subunit {Mus musculus}; contains Pfam
           profile PF03909: BSD domain
          Length = 591

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 39  IMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADALAARHSSADDSQA 209
           I  E P + +   + VP  +TE++FW  YF    L    N   A+AA  ++ D+  A
Sbjct: 207 IFAEKPAVRQAFINYVPSKMTEKDFWTKYFRAEYLYSTKN--TAVAAAEAAEDEELA 261


>At5g03435.1 68418.m00297 C2 domain-containing protein contains Pfam
           profile PF00168: C2 domain
          Length = 745

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 48  EDPNLEKMR--FDLVPKVITEENFWRNYFYRLSLICQ 152
           E PNL+++   FD  P  +++ N  R  + R+ ++CQ
Sbjct: 621 ESPNLDELEEEFDSFPSSVSDVNILRMRYDRIRMVCQ 657


>At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4
           family;
          Length = 648

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 115 QKFSSVITFGTRSKRIFSRFGSSVIIATATGYI 17
           QK S  + FGT    IF  FG SV +    GYI
Sbjct: 444 QKSSGAVPFGTMFALIFLWFGISVPLVFVGGYI 476


>At1g10720.1 68414.m01221 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 429

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 30  AVAIMTEDPNLEKMRFDLVPKVITEENFWRNYFYRLSLICQANEADA 170
           A+AI    P L  +R +L P  ++   FW+ YF  + L+ + N+ DA
Sbjct: 217 ALAIERLAPRLAALRIELCPCHMSVGYFWKVYF--VLLLSRLNKHDA 261


>At4g39160.1 68417.m05546 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 545

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 413 HYFIKVSILMQCNNINFI 360
           H+ +K SIL  CNN+N +
Sbjct: 52  HWSVKPSILRACNNVNLV 69


>At4g19900.1 68417.m02916 glycosyl transferase-related contains Pfam
           profiles PF01535: PPR repeat, PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif; several hypothetical proteins - Arabidopsis
           thaliana
          Length = 1302

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +3

Query: 108 NFWRNYFYRLSLICQANEADALAARHSSADDSQA*TPRTTG*S*FIVTITPLVCT--MHN 281
           +FW +    L    ++  A  +++ H S+D S   +P ++     + ++  LVCT  +  
Sbjct: 612 HFWNSVTSSLIPEPESLVAKLISSDHESSDLSLPSSPSSSPSQCLVKSVCSLVCTSYLRQ 671

Query: 282 SHILALYYNNNMIYD*N 332
           +H+++  +  N+ +D N
Sbjct: 672 NHVVSSPHRVNLDFDAN 688


>At2g44700.1 68415.m05563 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif;
          Length = 368

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 230 SRSPWCLSLGVVGGGMARREGVGLVGLADQRQAVEVVP 117
           S+  WC  +G++      R  VG+ G A+  Q VE+VP
Sbjct: 324 SKEIWCRMIGLL------RSEVGIHGAAEPSQLVEIVP 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,619,089
Number of Sequences: 28952
Number of extensions: 163813
Number of successful extensions: 378
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)