Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d01r
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 80 2e-15
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 74 1e-13
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 70 2e-12
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 49 3e-06
01_06_0363 - 28745581-28745709,28746043-28746114,28746373-287464... 48 8e-06
01_06_0808 + 32134765-32136570 31 1.3
06_03_0267 + 18970578-18972464 30 2.2
11_06_0037 - 19478885-19480472,19483125-19483267 29 5.2
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 80.2 bits (189), Expect = 2e-15
Identities = 38/95 (40%), Positives = 55/95 (57%)
Frame = -3
Query: 733 KYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSV 554
K GTDI+D KC+WL V AL+RA QK I+ +NYG PE +A++KDLY+EL L +
Sbjct: 279 KIGTDIEDYKCSWLVVQALERADENQKHILFENYGKPDPECVAKVKDLYKELNLEAVFHE 338
Query: 553 FEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
+E +Y+ L I+ + L I++R
Sbjct: 339 YERESYNKLIADIEAHPNKAVQNVLKSFLHKIYKR 373
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 74.1 bits (174), Expect = 1e-13
Identities = 35/95 (36%), Positives = 52/95 (54%)
Frame = -3
Query: 733 KYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSV 554
K GTDI+D KC+WL V AL+RA +QK ++ +NYG P +A++K LY EL L +
Sbjct: 245 KIGTDIEDYKCSWLVVQALERADESQKSVLFENYGKKDPACVAKVKSLYRELNLEAVFLD 304
Query: 553 FEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
+E +Y L I+ + L I++R
Sbjct: 305 YENESYKKLIADIEAQPSIAVQNVLKSFLHKIYKR 339
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/98 (34%), Positives = 53/98 (54%)
Frame = -3
Query: 742 VTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHT 563
V K GTDI+D KC+WL V A++ A + +I+ +NYG + P+ +A +K +Y EL L
Sbjct: 308 VIGKVGTDIEDYKCSWLIVQAMELANENEMKILYENYGKSDPKCVAEVKSVYRELDLQDI 367
Query: 562 YSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
+ +E Y L + I T ++ L I+RR
Sbjct: 368 FLEYESRVYKHLVSTIDAETDRAIRDILKSFLKKIYRR 405
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = -3
Query: 733 KYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQL 572
K GTDI+D KC+WL V AL A Q +++ NYG +++ +K Y L L
Sbjct: 323 KIGTDIEDHKCSWLIVQALGHADNNQIEVLHRNYGKKDSSSVSEVKRTYAALDL 376
>01_06_0363 -
28745581-28745709,28746043-28746114,28746373-28746417,
28746523-28746618,28747029-28747080,28747232-28747305,
28747386-28747502,28747844-28747930,28748186-28748281,
28748508-28748654
Length = 304
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = -3
Query: 649 IMEDNYGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKI 470
I ++NYG + P +A++KDLY EL L +S +E +Y+ L + I+ +
Sbjct: 236 IGKENYGKSDPACVAKVKDLYNELHLQRVFSEYERESYEKLISAIEAQPNEAVRAVLKSF 295
Query: 469 LDNIFRRS 446
L I++RS
Sbjct: 296 LHKIYKRS 303
>01_06_0808 + 32134765-32136570
Length = 601
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 631 GVNKPEAIARIKDLYEELQ--LPHTYSVFEETTYDLLRTQIQQV 506
G KPE + R+ D+YE L LP +F+E D++ T+ +V
Sbjct: 286 GPPKPEKLFRLLDMYEVLNDLLPEVEFLFQEGCDDIVLTEYNEV 329
>06_03_0267 + 18970578-18972464
Length = 628
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 707 KMHLAGSRCTAEGNSCPKTNHG 642
K H G RC+AEG CPK+ HG
Sbjct: 416 KAHGGGKRCSAEG--CPKSVHG 435
>11_06_0037 - 19478885-19480472,19483125-19483267
Length = 576
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -1
Query: 684 LHCRGQLLPKNKSWKTITESINLKLSPGLKISMKNFSYPIRTRSSKKLPTI 532
L+ R +L+P + +T I ++L I + N SYP+ + S P I
Sbjct: 97 LYNRLRLIPMHGDDGFVTHVIGIQLFSEANIDLSNVSYPVYKQQSNHRPNI 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,238,511
Number of Sequences: 37544
Number of extensions: 276191
Number of successful extensions: 541
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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