Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d01r
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)    88   8e-18
SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.24 
SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)              30   2.3  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 41/98 (41%), Positives = 61/98 (62%)
 Frame = -3

Query: 742 VTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHT 563
           VT K GTDI++GKCTWL V AL+RA   Q  I+++N G+N  EA A++K +Y EL L   
Sbjct: 204 VTGKVGTDIEEGKCTWLVVQALKRANAQQLTIIKENLGINDIEASAKVKRVYRELNLEQV 263

Query: 562 YSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
           +  +EE +Y  +   I + +  LP E+F   +  I++R
Sbjct: 264 FHEYEEASYQRIIDLISKHSGDLPDEVFLDFVRKIYKR 301


>SB_6824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 664 PAQKQIMEDN-YGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPH 488
           P+  +++E + Y ++KP     IK    EL  P  Y + E + Y+L +  I ++++   +
Sbjct: 534 PSIYELLEPSIYELSKPSIYELIKPSIYELSKPSIYELLEPSIYELSKPSIYELSKPFMY 593

Query: 487 EL 482
           EL
Sbjct: 594 EL 595



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 634 YGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIF 455
           Y ++KP     IK    E+  P  Y V + + Y+LL   I ++++    EL    ++ + 
Sbjct: 633 YELSKPPIYKLIKPFIYEVIKPFIYEVSKPSIYELLEPSIYELSKPSVFELIKPSINELS 692

Query: 454 RRSV 443
           + S+
Sbjct: 693 KPSI 696



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 664 PAQKQIMEDN-YGVNKPEAIARIKDLYEELQLPHTYSVFEETTYDLLRTQIQQVTRGLPH 488
           P+  +++E + Y ++KP      K    EL  P  + + + + Y+LL   I ++++   +
Sbjct: 566 PSIYELLEPSIYELSKPSIYELSKPFMYELSKPSIFELSKPSIYELLEPSIYELSKPSIY 625

Query: 487 EL 482
           EL
Sbjct: 626 EL 627


>SB_58| Best HMM Match : Prenyltrans (HMM E-Value=1.4e-16)
          Length = 713

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 679 LQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPH 566
           LQR      ++M D   VN+ +A+A  KD Y++   PH
Sbjct: 292 LQRMPEQLHRVMADRKQVNERDAVALQKDCYKQTVKPH 329


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,844,646
Number of Sequences: 59808
Number of extensions: 355287
Number of successful extensions: 752
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)