BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d01r
(744 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein. 25 2.5
AJ250916-1|CAB91840.1| 435|Anopheles gambiae serine protease pr... 24 5.7
>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
Length = 1133
Score = 25.0 bits (52), Expect = 2.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 634 YGVNKPEAIARIKDLYEELQ 575
YG N P +ARI+ L+++ Q
Sbjct: 518 YGTNMPALVARIRQLHQQGQ 537
>AJ250916-1|CAB91840.1| 435|Anopheles gambiae serine protease
protein.
Length = 435
Score = 23.8 bits (49), Expect = 5.7
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 672 GQLLPKNKSWKTITESINLKLSPGL-KISMKNFSYPIRTRSSKKLPTISLERRSNKSQGD 496
GQL N +T+ E + + K+ NF+ + R SK L LER+ ++G+
Sbjct: 32 GQLFNVNDVDQTLVEEDHGVAGVAIPKVHRLNFAERKQQRQSKHLDLNELERKRRATEGN 91
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,736
Number of Sequences: 2352
Number of extensions: 12072
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76507752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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