Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d01r
(744 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 101 3e-21
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 101 3e-21
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 101 3e-21
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 101 3e-21
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 101 3e-21
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 91 4e-18
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 76 2e-13
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 101 bits (242), Expect = 3e-21
Identities = 47/98 (47%), Positives = 63/98 (64%)
Frame = -3
Query: 742 VTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHT 563
VT K GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP
Sbjct: 247 VTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAV 306
Query: 562 YSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
+ +EE +Y + I+Q LP +F + I++R
Sbjct: 307 FLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 344
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 101 bits (242), Expect = 3e-21
Identities = 47/98 (47%), Positives = 63/98 (64%)
Frame = -3
Query: 742 VTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHT 563
VT K GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP
Sbjct: 254 VTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAV 313
Query: 562 YSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
+ +EE +Y + I+Q LP +F + I++R
Sbjct: 314 FLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 351
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 101 bits (242), Expect = 3e-21
Identities = 47/98 (47%), Positives = 63/98 (64%)
Frame = -3
Query: 742 VTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHT 563
VT K GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP
Sbjct: 321 VTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAV 380
Query: 562 YSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
+ +EE +Y + I+Q LP +F + I++R
Sbjct: 381 FLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 418
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 101 bits (242), Expect = 3e-21
Identities = 47/98 (47%), Positives = 63/98 (64%)
Frame = -3
Query: 742 VTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHT 563
VT K GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP
Sbjct: 320 VTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAV 379
Query: 562 YSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
+ +EE +Y + I+Q LP +F + I++R
Sbjct: 380 FLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 417
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 101 bits (242), Expect = 3e-21
Identities = 47/98 (47%), Positives = 63/98 (64%)
Frame = -3
Query: 742 VTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHT 563
VT K GTDIQD KC+WL V LQRATP Q QI+++NYG + E +AR+K LYEEL LP
Sbjct: 320 VTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAV 379
Query: 562 YSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
+ +EE +Y + I+Q LP +F + I++R
Sbjct: 380 FLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKR 417
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 91.1 bits (216), Expect = 4e-18
Identities = 44/98 (44%), Positives = 59/98 (60%)
Frame = -3
Query: 742 VTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHT 563
VT K GTDIQD KC L V L RATP Q QI+++NYG + E + R+K LYEEL LP
Sbjct: 249 VTGKIGTDIQDXKCNCLXVQCLXRATPEQYQILKENYGQKEAEKVPRVKALYEELDLPAV 308
Query: 562 YSVFEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
+ +EE +Y + I+Q LP +F + I++R
Sbjct: 309 FLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARQIYKR 346
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 75.8 bits (178), Expect = 2e-13
Identities = 33/69 (47%), Positives = 46/69 (66%)
Frame = -3
Query: 742 VTEKYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHT 563
VT + G D QD KC+WL V L +ATP Q QI+++NY + E +AR+K LYEEL LP
Sbjct: 222 VTGRVGNDFQDNKCSWLVVQCLLQATPEQYQILKENYRQKEAEKVARVKALYEELDLPAV 281
Query: 562 YSVFEETTY 536
+ +E+ +Y
Sbjct: 282 FLQYEKDSY 290
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,579,854
Number of Sequences: 237096
Number of extensions: 1548189
Number of successful extensions: 2805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2805
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8903143626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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