Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d01r
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical pr...    64   1e-10

>Z81106-1|CAB03221.2|  352|Caenorhabditis elegans Hypothetical
           protein R06C1.2 protein.
          Length = 352

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
 Frame = -3

Query: 742 VTEKYGTDIQDGKCTWLAVVALQR--ATPAQ--KQIMED---NYGVNKPEAIARIKDLYE 584
           +T K GTDIQDGKCTWLAV ALQ+   TP +   +++E+   ++G   PE + +IK +Y+
Sbjct: 244 ITGKIGTDIQDGKCTWLAVRALQKMHKTPEKWGAKLIEEFKTSFGSVDPEKVEKIKRIYD 303

Query: 583 ELQLPHTYSVFEETTYDLLRTQIQQV 506
           ELQL   +  FE+     ++  I ++
Sbjct: 304 ELQLKQEFRRFEKHFSGEIKKSISEI 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,591
Number of Sequences: 27780
Number of extensions: 281830
Number of successful extensions: 625
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)