Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d01r
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi...    73   2e-13
At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FP...    72   5e-13
At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP...    72   5e-13
At5g56920.1 68418.m07106 expressed protein                             28   7.5  

>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
           mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
           diphosphate synthase 1 identical to SP|Q09152 Farnesyl
           pyrophosphate synthetase 1, mitochondrial precursor (FPP
           synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
           1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
           thaliana}
          Length = 384

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 32/74 (43%), Positives = 48/74 (64%)
 Frame = -3

Query: 733 KYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSV 554
           K GTDI+D KC+WL V AL+R +  Q +I+ +NYG   P  +A++KDLY+EL L   +  
Sbjct: 288 KIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKPDPSNVAKVKDLYKELDLEGVFME 347

Query: 553 FEETTYDLLRTQIQ 512
           +E  +Y+ L   I+
Sbjct: 348 YESKSYEKLTGAIE 361


>At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FPS2)
           / FPP synthetase 2 / farnesyl diphosphate synthase 2
           identical to SP|Q43315 Farnesyl pyrophosphate synthetase
           2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
           synthetase 2) [Includes: Dimethylallyltransferase (EC
           2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
           {Arabidopsis thaliana}
          Length = 247

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 34/95 (35%), Positives = 55/95 (57%)
 Frame = -3

Query: 733 KYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSV 554
           K GTDI+D KC+WL V AL+R +  Q +I+ +NYG  +P  +A++K LY+EL L   +  
Sbjct: 151 KIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKAEPSNVAKVKALYKELDLEGAFME 210

Query: 553 FEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
           +E+ +Y+ L   I+         +    L  I++R
Sbjct: 211 YEKESYEKLTKLIEAHQSKAIQAVLKSFLAKIYKR 245


>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
           / FPP synthetase 2 / farnesyl diphosphate synthase 2
           identical to SP|Q43315 Farnesyl pyrophosphate synthetase
           2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
           synthetase 2) [Includes: Dimethylallyltransferase (EC
           2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
           {Arabidopsis thaliana}
          Length = 342

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 34/95 (35%), Positives = 55/95 (57%)
 Frame = -3

Query: 733 KYGTDIQDGKCTWLAVVALQRATPAQKQIMEDNYGVNKPEAIARIKDLYEELQLPHTYSV 554
           K GTDI+D KC+WL V AL+R +  Q +I+ +NYG  +P  +A++K LY+EL L   +  
Sbjct: 246 KIGTDIEDFKCSWLVVKALERCSEEQTKILYENYGKAEPSNVAKVKALYKELDLEGAFME 305

Query: 553 FEETTYDLLRTQIQQVTRGLPHELFFKILDNIFRR 449
           +E+ +Y+ L   I+         +    L  I++R
Sbjct: 306 YEKESYEKLTKLIEAHQSKAIQAVLKSFLAKIYKR 340


>At5g56920.1 68418.m07106 expressed protein
          Length = 227

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 603 GLKISMKNFSYPIRTRSSKKLPTISLERRSN 511
           G  I  + F Y  R+RS  K P    ER+SN
Sbjct: 62  GFSIKWEQFDYNFRSRSMDKSPNEISERKSN 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,765,904
Number of Sequences: 28952
Number of extensions: 243447
Number of successful extensions: 486
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)