Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d01f
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.0  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    21   7.9  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 104 FFKKNYLMVFNSINFYFYPTILRNVR 27
           FF  NY +VF+ +  Y     ++N R
Sbjct: 348 FFPINYTLVFSVLKQYVMQQQVKNFR 373


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 461 IPDDVRKDSHELPGLVL 411
           +PD  +K  H LP LVL
Sbjct: 215 MPDIKKKGLHSLPRLVL 231



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 410 GNGQSSGSHRHFLRSQGRQESV 345
           G    S  HRH L+   R +SV
Sbjct: 325 GGALVSAKHRHLLKGIERADSV 346


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,703
Number of Sequences: 336
Number of extensions: 3288
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)