Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d01f
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)    50   2e-06
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.71 
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)                    30   1.6  
SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)        30   1.6  
SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18)                    30   1.6  
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)           29   2.2  
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                29   3.8  
SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07)                 28   5.0  
SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)                28   6.6  
SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = +3

Query: 405 VSKDQSREFMAVFPDIVRDLTETGKH-IDVPEASKWLAKLLQYNVPNGKKNRGLATI 572
           ++ D  + F   FP  V DL +  ++ + + ++ KWL ++L+YNVP GK+NRGL+ I
Sbjct: 13  LTSDDWKLFDDAFPGFVNDLVQEEENDLAIGDSIKWLREVLEYNVPGGKRNRGLSVI 69


>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 266 EAGPVGEQVTTG*GNRTEETAEAAKISQ 349
           EAG +GE    G  N T ET+EA K S+
Sbjct: 616 EAGEIGEASEAGGANETSETSEAGKASE 643


>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
          Length = 682

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
 Frame = +1

Query: 139 IEVLQKCSRQRKA*KSLCRRTKMKYAGTSARQLASPILMPWPRGWTSRRASHHRL-RKPD 315
           I  L++C R R   K++C + K++   T+A   +   L+   R +  R   +  + R   
Sbjct: 38  IRQLKRCVRFRYRRKNICEKFKLRSTATAATLWSRRPLICRSRRYRHRNGHNCSISRNSS 97

Query: 316 RRDC*SCKNI---TDSCRP*LL-RKCRWLPEDWPFPRTSPGS 429
              C SC+ +     SC   LL R    +P   P   TSP +
Sbjct: 98  SEICPSCRALETSLSSCLATLLVRPLETIPAPAPTTPTSPAT 139


>SB_34899| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00019)
          Length = 1136

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 476 ASLSEIPDDVRKDSHELPGLVLGNGQSSG-SHRHFLRSQGRQESVIFLQLQQSLR 315
           ASL EI   ++K   EL   +  N QSS    + F +    ++ VIF QLQQ ++
Sbjct: 45  ASLKEIISGLKKQVEELENSLNSNKQSSKCEEKKFKQINSEKDKVIF-QLQQDIK 98


>SB_784| Best HMM Match : WAPL (HMM E-Value=2.4e-18)
          Length = 539

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = +3

Query: 378 MPMATRGLAVSKDQSREFMA--VFPDIVRDL---TETGKHIDVPEASKW--LAKLLQYNV 536
           MP  T G   SK + +E  +  +F ++  D+   T TG  +DVP+ S W  ++K ++Y  
Sbjct: 1   MPKYT-GKTYSKSRKQECKSSSIFDEVKNDVESKTTTGSTLDVPKKSSWTRISKAVEYTK 59

Query: 537 PNGKKNR 557
               K +
Sbjct: 60  EQSPKKK 66


>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
          Length = 265

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +3

Query: 309 TGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHID 488
           +G KRL++ ++ +R L  +TP+ +    +  A    +S++     P  V  +   G   D
Sbjct: 127 SGDKRLMRDKQVYRNLPEVTPEALEQVKKNYAWVAGESQKLNKHNPGHV--VVFMGSASD 184

Query: 489 VPEASKWLAKLLQYNVP 539
           +    K  A L  +NVP
Sbjct: 185 IDHCKKIEAALKSFNVP 201


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = +3

Query: 216  RHISKTTSVTNSDAMAPRLDQSASKSPQAEETGPKRLLKLQKY---HRFLSTLTPQEMPM 386
            R IS  +S +++++  PR++ SA  +P  + + PKR+ K + +    R LS    ++ P 
Sbjct: 2344 RTISPASSRSSANS-GPRVEHSAGSTPSFDRSDPKRISKERIFVIKGRRLSVEQDKDKPD 2402

Query: 387  ATRGLAVSKDQS 422
             T+ L  ++  +
Sbjct: 2403 GTKTLESARSSA 2414



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 243  TNSDAMAP-RLDQSASKSPQAEETGPKRLLK 332
            T SD+++P  +  S + SPQ + T PKR+ K
Sbjct: 2241 TRSDSVSPFSIRSSENASPQFDRTDPKRMSK 2271


>SB_23339| Best HMM Match : I-set (HMM E-Value=1.3e-07)
          Length = 423

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +3

Query: 213 RRHISKTTSVTNSDAMAPRLDQSASKSP 296
           R H  KTTS   SDA   R D  A KSP
Sbjct: 221 RFHSYKTTSTAQSDAFLNRTDWYAFKSP 248


>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 189 MQAYKNEVRRHISKTTSVTNSDAMAPRLDQSASKSPQAEETGPKRLLKLQKYHRFLST 362
           +QA + ++R+     +SVT  +A        A +    +E+    L KLQ+ HR L T
Sbjct: 164 VQAMQTQLRQFQDLVSSVTMENAQLKNASMRAQQLNADKESLTLELTKLQQSHRQLKT 221


>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
          Length = 800

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 189 MQAYKNEVRRHISKTTSVTNSDAMAPRLDQSASKSPQAEETGPK 320
           +Q  + + ++ I+KT  +T      P   Q A ++PQAEE  PK
Sbjct: 51  IQQEEQQRQQVIAKTVEITAESPDEPT--QEAQETPQAEEDSPK 92


>SB_57555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 300 AEETGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGK 479
           +E  GPK+ + L    + L TLT +           + +QS EFMA   +   D +E  K
Sbjct: 123 SEHKGPKKSI-LHTDEKQLGTLTVRHRLSKVEFRNPNIEQSSEFMAEIKEEENDSSEKDK 181

Query: 480 H 482
           H
Sbjct: 182 H 182


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +2

Query: 257  HGPEAGPVGE-----QVTTG*GNRTEETAEAAKISQIPVDPDSSGNADGYPRTGRFQ 412
            H  E   VG+     QVT   G RT+ET  A+ I+      DS  ++ G   TG+FQ
Sbjct: 3369 HSTERSAVGQAFQKLQVTEKGGERTKETQSASTIA----IQDSQISSSGRSNTGQFQ 3421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,961,965
Number of Sequences: 59808
Number of extensions: 411113
Number of successful extensions: 1188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)