Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d01f
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    26   4.8  
U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alph...    28   5.8  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AL110479-6|CAB54354.2|  447|Caenorhabditis elegans Hypothetical
           protein Y105C5B.8 protein.
          Length = 447

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 355 RNL*YFCSFSSLFGPVSSACGDLLADWSSLGAMASE 248
           R + YFC+F S+F P+ S   D+  D   L   + E
Sbjct: 142 RGVAYFCAFFSIFEPLPSVYKDIQRDGHQLNCSSFE 177


>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 25.8 bits (54), Expect(2) = 4.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 333 LQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGK 479
           L  Y   L T++P +    T+  +    ++ +  AV PDI + L  TGK
Sbjct: 426 LNFYPMELITISPNQRVRITQQTSSQSQRTTKESAVLPDIRQRLIMTGK 474



 Score = 20.6 bits (41), Expect(2) = 4.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 468 ETGKHIDVPEASKW 509
           ETG+H+  P   KW
Sbjct: 514 ETGEHLINPRDCKW 527


>U58762-5|AAK39304.2|  496|Caenorhabditis elegans Hypothetical
           protein T27F7.3a protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 497 FRNINV-LASLSEIPDDVRKDSHELPGLVLGNGQSSGSHRHFLRS 366
           FR I+V L +   +PD+V + +     LV G G  S   RH LRS
Sbjct: 14  FRCISVYLVASWFVPDEVYQSAEVAHHLVYGTGHLSWEWRHSLRS 58


>AJ431373-1|CAD24083.1|  496|Caenorhabditis elegans putative alpha 2
           mannosyltransferaseprotein.
          Length = 496

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 497 FRNINV-LASLSEIPDDVRKDSHELPGLVLGNGQSSGSHRHFLRS 366
           FR I+V L +   +PD+V + +     LV G G  S   RH LRS
Sbjct: 14  FRCISVYLVASWFVPDEVYQSAEVAHHLVYGTGHLSWEWRHSLRS 58


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 432 MAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNV 536
           M++F D+ + L E       PE+ KWLA+LL   +
Sbjct: 235 MSIFDDLEKLLHEFVLRSGEPESPKWLAQLLNTKI 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,016,971
Number of Sequences: 27780
Number of extensions: 306336
Number of successful extensions: 878
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)