Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10d01f
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    23   3.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   3.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   3.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   6.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 210 VRRHISKTTSVTNS 251
           VR H++ T SVTNS
Sbjct: 341 VRNHLNSTCSVTNS 354


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 253 MPWPRGWTSRR 285
           MPW +GWT  R
Sbjct: 135 MPWFKGWTVER 145


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 253 MPWPRGWTSRR 285
           MPW +GWT  R
Sbjct: 151 MPWFKGWTVER 161


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 253 MPWPRGWTSRR 285
           MPW +GWT  R
Sbjct: 208 MPWFKGWTVER 218


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 190 INFSKLFFVENIFVVLQY 137
           INF + FF+E +  VL +
Sbjct: 10  INFDRFFFIEGMTNVLDF 27


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 385 WL-PEDWPFPRTSPGSSWLSFRTSSGISLRLASTLMFRKPANGWLSCCNI 531
           W+ PE  P   T   +S L+  T +  S +    + + K  + W+S C++
Sbjct: 236 WIKPEAIPARVTLGVTSLLTLATQNTQSQQSLPPVSYVKAIDVWMSSCSV 285


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 292 DLLADWSSLGAMASELVT 239
           D+ AD+ SLG +  EL+T
Sbjct: 543 DISADYWSLGVLMFELLT 560


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,617
Number of Sequences: 438
Number of extensions: 4018
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)