Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10d01f
(596 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP... 46 3e-05
At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi... 42 4e-04
At5g12980.1 68418.m01488 rcd1-like cell differentiation protein,... 34 0.083
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 32 0.33
At3g52300.1 68416.m05748 ATP synthase D chain-related contains w... 31 0.44
At1g01400.1 68414.m00055 hypothetical protein 31 0.44
At3g52525.1 68416.m05776 ovate protein, putative 83% similar to ... 30 1.3
At1g12940.1 68414.m01503 high-affinity nitrate transporter, puta... 30 1.3
At4g15890.1 68417.m02415 expressed protein 29 2.4
At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related c... 29 2.4
At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferlin... 28 4.1
At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containi... 28 5.4
At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containi... 28 5.4
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 28 5.4
At5g60320.1 68418.m07560 lectin protein kinase family protein co... 27 7.2
At5g51790.1 68418.m06421 basix helix-loop-helix (bHLH) family pr... 27 7.2
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si... 27 9.5
>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 342
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +3
Query: 414 DQSREFMAVFPDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMLE 593
D F+ V+ + DL + E+ +WL ++L YNV GK NRGL+ + +YK+L+
Sbjct: 3 DLKSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERMLDYNVRGGKLNRGLSVVDSYKLLK 62
Query: 594 K 596
+
Sbjct: 63 Q 63
>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
diphosphate synthase 1 identical to SP|Q09152 Farnesyl
pyrophosphate synthetase 1, mitochondrial precursor (FPP
synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
thaliana}
Length = 384
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/88 (25%), Positives = 42/88 (47%)
Frame = +3
Query: 333 LQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHIDVPEASKWL 512
+ +H L +L + ++ D F+ V+ + DL E+ W+
Sbjct: 18 IPSHHLHLRSLGGSLYRRRIQSSSMETDLKSTFLNVYSVLKSDLLHDPSFEFTNESRLWV 77
Query: 513 AKLLQYNVPNGKKNRGLATILAYKMLEK 596
++L YNV GK NRGL+ + ++K+L++
Sbjct: 78 DRMLDYNVRGGKLNRGLSVVDSFKLLKQ 105
>At5g12980.1 68418.m01488 rcd1-like cell differentiation protein,
putative similar to protein involved in sexual
development [Schizosaccharomyces pombe] GI:1620896;
contains Pfam profile PF04078: Cell differentiation
family, Rcd1-like
Length = 311
Score = 33.9 bits (74), Expect = 0.083
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 444 PDIVRDLTETGKHIDVPEASKWLAKLLQYNVPNGKKNRGLA 566
PD++RD T +G D P A +WL +LL G+ +GLA
Sbjct: 266 PDLLRDATFSGCLYDDPPAMQWLQQLLHNVNVGGRAPQGLA 306
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 447 PERQP*TPGTGPWKRPVLG*PSAFPEESGSTGICDIFAASAVSSVRFPQPVVTCSPT-GP 271
PE P P +G PVLG P + P S TG ++ + + +P P+ SP+ P
Sbjct: 203 PEIVPSPPESGYTPGPVLGPPYSEPGPSTPTGSIPSPSSGFLPPIVYPPPMAPPSPSVTP 262
Query: 270 ASGPW 256
S W
Sbjct: 263 TSAYW 267
>At3g52300.1 68416.m05748 ATP synthase D chain-related contains weak
similarity to ATP synthase D chain, mitochondrial (EC
3.6.3.14) (Swiss-Prot:P31399) [Rattus norvegicus]
Length = 168
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 177 LEKFMQAYKN-EVRRHISKTTSVTNS--DAMAPRLDQSASKSPQAEETGPKRLLKLQKYH 347
++K+ +AY + E+ +++ K T DA+ L ++ KS + E K + +Q+
Sbjct: 76 VDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEIS 135
Query: 348 RFLSTLTPQE 377
+ LST+T E
Sbjct: 136 KKLSTMTADE 145
>At1g01400.1 68414.m00055 hypothetical protein
Length = 204
Score = 31.5 bits (68), Expect = 0.44
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 201 KNEVRRHISKTTSVTNSDAMAPRL-DQSASKSPQAEETGPKRLLKLQKYHRFLSTLT 368
+NEV H + T ++ A +PR +++ ++S Q +TGP+ +L LQ LS T
Sbjct: 9 RNEVD-HETPTKPDESASASSPRRSEETLNQSTQINQTGPRSVLHLQSQESHLSNST 64
>At3g52525.1 68416.m05776 ovate protein, putative 83% similar to
ovate protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 159
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +3
Query: 315 PKRLLKLQKY-HRFLSTLTPQEMPMATRGLAVSKDQSREFM 434
PKR ++ H +S+ TP P+AT +AV KD ++
Sbjct: 39 PKRPSSTYRHCHSSISSATPSSTPLATASVAVEKDSDDPYL 79
>At1g12940.1 68414.m01503 high-affinity nitrate transporter,
putative similar to trans-membrane nitrate transporter
protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
high-affinity nitrate transporter ACH1 [Arabidopsis
thaliana] GI:3608362
Length = 502
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 328 SSLF-GPVSSACGDLLADWSSLGAMASELVTLVVLLMCR 215
SS+F GPV + + A W +LG A++L+ +V + R
Sbjct: 158 SSMFSGPVVGSANGIAAGWGNLGGGATQLIMPIVFSLIR 196
>At4g15890.1 68417.m02415 expressed protein
Length = 1314
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/86 (26%), Positives = 36/86 (41%)
Frame = +3
Query: 264 PRLDQSASKSPQAEETGPKRLLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVF 443
PR+ S Q E L L++ R + L+P + SKD R+ A+F
Sbjct: 505 PRMIMDNETSIQEECENVFHELVLERILRAGNVLSPDSASLPNNRNTTSKDLDRDIEALF 564
Query: 444 PDIVRDLTETGKHIDVPEASKWLAKL 521
P+ V L + + E S W+ K+
Sbjct: 565 PEGVLVLL---RELCNSEVSPWVTKI 587
>At1g78880.1 68414.m09195 balbiani ring 1-related / BR1-related
contains weak similarity to BR1 [Chironomus tentans]
gi|7042|emb|CAA45607
Length = 468
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +2
Query: 305 GNRTEETAEAAKISQIPVDPDSSGNAD----GYPRTGRFQGPVPGVHGCLSGH 451
G +++ E K+ IP D S + G R+G GPVP G +SG+
Sbjct: 39 GGDIKKSGELGKMFDIPTDGTKSRKSGPITGGSSRSGAQSGPVPNATGRMSGN 91
>At1g71440.1 68414.m08253 tubulin folding cofactor E / Pfifferling
(PFI) almost identical to tubulin folding cofactor E
(Pfifferling; PFI) GI:20514267 from [Arabidopsis
thaliana]; identical to cDNA tubulin folding cofactor E,
GI:20514266
Length = 531
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 295 GDLLADWSSLGAMASELVTLVVL-LMCRRTS 206
G+L++DW +GA+ +L L L L C S
Sbjct: 169 GNLISDWEEIGALCEQLPALTTLNLSCNSLS 199
>At2g17033.2 68415.m01965 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 505
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 462 LTETGKHIDVPEASKWLAKLLQYNVP 539
L+ G H +P+ WL KL +NVP
Sbjct: 321 LSSYGAHDALPQMGSWLQKLKGFNVP 346
>At2g17033.1 68415.m01964 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 504
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 462 LTETGKHIDVPEASKWLAKLLQYNVP 539
L+ G H +P+ WL KL +NVP
Sbjct: 320 LSSYGAHDALPQMGSWLQKLKGFNVP 345
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/86 (19%), Positives = 34/86 (39%)
Frame = +3
Query: 324 LLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHIDVPEAS 503
++ L K R T + P+ +KD + EF DI+ E G + ++ +
Sbjct: 757 IIALNKVDRLYGWKTCKNAPIVKAMKQQNKDVTNEFNIRLTDIITQFKEQGLNTEIYYKN 816
Query: 504 KWLAKLLQYNVPNGKKNRGLATILAY 581
K + + + K G+ +L +
Sbjct: 817 KEMGETFSIVPTSAKSGEGVPDLLLW 842
>At5g60320.1 68418.m07560 lectin protein kinase family protein
contains Pfam domains, PF00069: Protein kinase domain,
PF00139: Legume lectins beta domain, and PF00138: Legume
lectins alpha domain
Length = 675
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 334 CKNITDSCRP*LLRKCRWLPEDWPFPRTSPGSSWLSFRT 450
C NI RP + + +++ ++ P P SPGS + T
Sbjct: 598 CTNIVAESRPTMEQVIQYINQNLPLPNFSPGSLGIGVST 636
>At5g51790.1 68418.m06421 basix helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 209
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = -1
Query: 479 LASLSEIPDDVRKDSHELPGLVLGNGQSSGSHRHFLRSQGRQESVI-FLQLQQSLRSGFL 303
+ LS D+++++ + P + G+G SGS R S Q V F + SL SG L
Sbjct: 87 IKDLSARRDELKREIGD-PTSLTGSGSGSGSSRSEPASVMVQPCVSGFEVVVSSLASG-L 144
Query: 302 SLW*LARRLVQPRGHGIRI 246
W L+R L G G+ +
Sbjct: 145 EAWPLSRVLEVLHGQGLEV 163
>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 720
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 366 TPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHIDVPE 497
TP TRG V +D+ E++ IV D+ T H++ E
Sbjct: 338 TPSARETHTRGGTVKEDRVSEWLWTLHRIVVDVVRTDSHLEFYE 381
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,181,308
Number of Sequences: 28952
Number of extensions: 283425
Number of successful extensions: 882
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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