Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c24r
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    29   0.55 
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.97 
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    29   0.97 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.3  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   2.2  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   3.0  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    27   3.9  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    26   6.8  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    26   6.8  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   9.0  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.0  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   9.0  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -3

Query: 646  LDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLL 470
            L KW +   L    PS+  ++    K  +A+  +  E EIL K  +L+ E+NL  +KLL
Sbjct: 2140 LSKWSTPTKLV--EPSQ--FRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIARKLL 2194


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 20/80 (25%), Positives = 35/80 (43%)
 Frame = -3

Query: 748 IYWLVERKAASRNTSVQGNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEK 569
           ++  ++  A   + S     +TK KN         D+ I   DL   +PS+   K+  E+
Sbjct: 133 VFTFIDSFATPSSNSTVTEAMTKMKNEKVLEYPYKDRNIMLGDLASRIPSKDSEKLDEER 192

Query: 568 RRKALAEALNENEILHKSLS 509
           +  AL +  + + I H S S
Sbjct: 193 QPIALEKTKSLDSISHSSSS 212


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -3

Query: 562  KALAEALNENEILHKSLSLLTEENLK-YKKLLDEANSFIEVCKELMSDAADDT 407
            K L EAL         LS + E N K YK LLD+ N      K L S+    T
Sbjct: 1038 KTLREALQSKTNNIDHLSTILERNRKEYKSLLDDYNQLRARYKNLQSNTPQST 1090


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 338 LFYWFNSIFNSAIAYFSIIYFNASIISSV 424
           +FYWF  I +S++A  +++YF  S++ SV
Sbjct: 574 VFYWFFKISSSSLA-TAVLYFGYSLLISV 601


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 718 SRNTSVQGNIVTKKKNSSKSIQVNLDKWISENDLC-LEVPSETYWKVVAEK 569
           S N     N + ++   ++S ++N D W  ENDL   ++P E Y K+ + +
Sbjct: 56  SSNIQESCNWILQQVVENRS-KINFDAWSFENDLSDNDMPKENYLKIFSNQ 105


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 640 KWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLL 470
           KW  +    L V    Y +  A +       A+N   IL KS + + E NLK + +L
Sbjct: 653 KWKKDGQPWLVVAEHNYGEGSAREHAALQPRAMNGRIILTKSFARIHETNLKKQGVL 709


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 604 PSETYWKVVAEKRRKALAEAL-NENEILHKSLSLLTEENLKYKKLLDEAN 458
           PS+   + + EK ++  AE L +ENE L  S  L +   LK +KL+D  N
Sbjct: 351 PSDNGVQDLQEKMQEVNAEKLQHENEKLESSHELGSIRTLKAQKLIDLDN 400


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -3

Query: 745 YWLVERKAASRNTSVQGNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSET 593
           ++ V  ++ +   S   N V   K SSK I+VN    +    + + +P +T
Sbjct: 287 FYSVNLESITVTNSTSSNNVQSSKRSSKDIEVNTTVTLDTGTVYIYLPEDT 337


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 541 NENEILHKSLSLLTEENLKYKKLL 470
           NENEIL   +S L EE +  K LL
Sbjct: 509 NENEILSAQVSALREEIVSLKTLL 532


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -3

Query: 589  WKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADD 410
            W  V++        +LN+N  ++K   L T+E L  K L+   + F+ + +E     +D 
Sbjct: 848  WDEVSDYTLLYQPYSLNKNPPINKIQPLTTDEMLYPKMLVGIDSEFVALQQEETEVRSDG 907

Query: 409  TGIEIDDTKI 380
            T   I  +K+
Sbjct: 908  TKSTIKPSKL 917


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = -3

Query: 583 VVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
           ++ + R+ AL + L  ++   ++LSL+++  L+    LD    +I    E+MSD
Sbjct: 685 ILMQLRKAALHQLLFRSQYNLETLSLMSKRILREDAYLDANPQYIFEDMEVMSD 738


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 219 LIHGLIIMFLRSDSIRKNELSDEIDKNEA 133
           L+HG   + + S  IR+ EL D +D N +
Sbjct: 379 LLHGSFFLAVLSVDIRRLELQDFLDSNSS 407


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = -3

Query: 658 IQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHK--SLSLLTEENLK 485
           +QVNL + +    L  E PS+   +    +    +    N+N  + +  +++ +  E +K
Sbjct: 250 LQVNLCRIL----LACERPSDNPTRATLIRVLDRILSLPNDNSNVQQVNAVNAILFEAIK 305

Query: 484 YKKLLDEANSFIEVCKELMSDAADD 410
              L+DE++S  E C + ++D   D
Sbjct: 306 LAFLVDESHSLYEKCMDRLADMIAD 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,735
Number of Sequences: 5004
Number of extensions: 44749
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)