Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c24r
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 33 0.19
04_04_1037 + 30316557-30316692,30317104-30317180,30317287-303173... 32 0.44
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 31 0.77
05_01_0146 - 953957-956278,956468-956786,957185-957213 30 1.8
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 29 4.1
05_04_0035 + 17378541-17381276 28 7.1
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 28 9.4
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 28 9.4
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = -3
Query: 580 VAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDT 407
V EK ++A E +E+E + ++L + E K K LDE NS IE K +++ +T
Sbjct: 787 VLEKLKQAWDELNSESENIKQALDVKNSEVDKLKHALDENNSEIENLKHTLNEKNSET 844
>04_04_1037 +
30316557-30316692,30317104-30317180,30317287-30317353,
30317761-30317813,30317906-30318322
Length = 249
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -3
Query: 592 YWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAAD 413
Y K + EK +K ++ N + L + S +T+ NL +D A E ELM +D
Sbjct: 126 YLKEILEKAQKNISLDANGSANLSSTRSQITDINLALSGFMDNATQVQEENNELMKPISD 185
Query: 412 D 410
D
Sbjct: 186 D 186
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -3
Query: 598 ETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDE 464
E Y +VV +++R+A A L E E + ++ L E+ LK+++ D+
Sbjct: 215 EAYLQVVGQEKREAEAMKLLEEEQMQRTAKELLEQYLKFRQEADD 259
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -3
Query: 574 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGIEI 395
E +A +EALN + + + LTEEN+K L+E E K + D E
Sbjct: 453 EAAEEAASEALNNEKAANVKIEGLTEENVKLISELNETRDREEKEKRAVEDLTAALSEES 512
Query: 394 DDTK 383
D K
Sbjct: 513 DKAK 516
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/104 (20%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Frame = -3
Query: 682 KKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAE----KRRKAL------AEALNEN 533
++K + +S+ +++ ++EN+ + + E Y K + + ++++A+ A L++
Sbjct: 213 QEKKALESVVSSMESKLAENEAAISLMRENYEKRLLDQQTAQKKQAMKFQEQEASLLDQL 272
Query: 532 EILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGI 401
K+++ L+EE + K L +E I + ++ A DD +
Sbjct: 273 SSTKKTVTSLSEEFRREKTLAEELREEIRRLESSLAQAGDDKDV 316
>05_04_0035 + 17378541-17381276
Length = 911
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +2
Query: 164 SFLRIESDLRNIIISPCIKXXXXXXXXXXFHKPQHRSLIQAVFVFGSVI 310
SF+ I S+ N++++ C K FH+ +++ V F ++I
Sbjct: 359 SFIGINSESYNVMVNQCFKKCKFHEAIEVFHRQPRKNVQMDVGCFNNII 407
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 27.9 bits (59), Expect = 9.4
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Frame = -3
Query: 745 YWLVERKAASRNTSVQGNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAE-- 572
Y L K A ++ G++ N S S K S ++ +PS ++ +
Sbjct: 200 YLLSNSKNAQSTSAFSGSVPAGLGNVSSSRSEGAYKKRSLSEFLQNIPSSKQ-SIIGDGP 258
Query: 571 -KRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFI 449
KRRK L+ + S ++ +L Y KLL+E N+ I
Sbjct: 259 GKRRKLSEFMLDGLPLKANSPNMQPRTSLTYGKLLEEVNNCI 300
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = -3
Query: 574 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAAD 413
EK+ KALAEA EN L +S S +++ +L D ++ +VC + SD+ +
Sbjct: 690 EKKEKALAEA--ENRPLPQSFS---SNDVRALRLSDFKHAHEQVCASVSSDSTN 738
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,069,470
Number of Sequences: 37544
Number of extensions: 219056
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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