Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c24r
(768 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1992| Best HMM Match : Geminin (HMM E-Value=0.0018) 40 0.003
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 30 1.8
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06) 29 3.1
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32) 29 4.1
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 4.1
SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64) 29 5.5
SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09) 29 5.5
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 28 7.2
SB_54590| Best HMM Match : rve (HMM E-Value=4.8e-35) 28 7.2
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 28 7.2
SB_57243| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 28 9.5
SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35) 28 9.5
SB_52324| Best HMM Match : Retrotrans_gag (HMM E-Value=0.97) 28 9.5
SB_43121| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 28 9.5
SB_40877| Best HMM Match : RVT_1 (HMM E-Value=2.9e-28) 28 9.5
SB_34233| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 28 9.5
SB_32124| Best HMM Match : K-box (HMM E-Value=4.1) 28 9.5
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43) 28 9.5
SB_18449| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 28 9.5
SB_697| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 28 9.5
SB_411| Best HMM Match : RVT_1 (HMM E-Value=2.5e-29) 28 9.5
SB_53357| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_53290| Best HMM Match : RVT_1 (HMM E-Value=3.8e-31) 28 9.5
SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 28 9.5
SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_45268| Best HMM Match : Retrotrans_gag (HMM E-Value=0.97) 28 9.5
SB_39667| Best HMM Match : rve (HMM E-Value=9e-32) 28 9.5
SB_28151| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 28 9.5
SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32) 28 9.5
SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_24280| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 28 9.5
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08) 28 9.5
SB_4461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_3870| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_3083| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 28 9.5
>SB_1992| Best HMM Match : Geminin (HMM E-Value=0.0018)
Length = 155
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Frame = -3
Query: 718 SRNTSVQGNIVTKKKNSSKSIQVNLDKWISENDLCL---EVPSETYWKVVAEKRRKALAE 548
S +S + + K++SS+ + + K +S+ L E E+YW+++AE+RR AL E
Sbjct: 64 SSTSSDSSDTESTKRSSSEQVTDDDKKSVSDEAFALMIQEPAPESYWQLLAEERRLALQE 123
Query: 547 ALNENE 530
L EN+
Sbjct: 124 TLEENQ 129
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 33.1 bits (72), Expect = 0.25
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = -3
Query: 691 IVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAE-KRRKALAEALNENEILHKS 515
I ++ + + + L++W N ++ ET E RRK L L+E E++++
Sbjct: 1506 ITSRCEGREEDLHTALEQWQGYNS-AMQCFKETLAMGEVELTRRKTLV--LSEIEMINEQ 1562
Query: 514 LSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGIEIDD 389
++LL E + K LDE + ++ ++L A+ + ID+
Sbjct: 1563 INLLKEFKNEVKSRLDEYDCLFDIGEKLKRGASSEGEARIDE 1604
>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 33.1 bits (72), Expect = 0.25
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -3
Query: 580 VAEKRRKALAEALNEN-EILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAAD 413
V K R L E+L E+ +L +S L EENLK++++L+E + K+L S+ D
Sbjct: 1622 VESKDRPTLKESLVEDVSMLEHKVSSLEEENLKFRRVLEE---YANEVKQLHSEKED 1675
>SB_40530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 31.1 bits (67), Expect = 1.0
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = -3
Query: 745 YWL-VERKAASRNTSVQGNIVTKKKNSSKSIQVNLDK-WISEN-DLCLEVPSETYWKVVA 575
YW+ + S QG+I T K + V L K W+ ++ DL EV +ET +V
Sbjct: 148 YWVEISDALISLGGVSQGDIDTLKVTPLERDYVTLLKEWVDKDLDLSKEV-NETKKEVQE 206
Query: 574 EKR--RKALAEALNENEILHKSLSLLTEENLKYKKL-LDEANSFIEVCKELMSDAADDTG 404
K+ ++ + NE++HK L+E +LK +K+ +D A+ E + ++ D T
Sbjct: 207 TKKEVQETKIKVDETNEVVHKMDGKLSEMSLKAEKMAVDLASLKEEFSSKKVNSKKDITA 266
Query: 403 IEIDD 389
+ D+
Sbjct: 267 AKGDE 271
>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1178
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Frame = -3
Query: 673 NSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEE 494
+SSK ++ NLDK + + L + + E K L+ + +E +K+L+L ++
Sbjct: 513 SSSKKLKQNLDKAVDDVITTLPNQDKCFTSTKPEASSKFLSPSEDEKNSFYKALNLCKKK 572
Query: 493 NLKYKKLLDEANSFIEVCKELMS--DAADDTGIEIDD---TKICNGT 368
+ + A+SFI + +++ D ++ + ++ KIC+ T
Sbjct: 573 PVVLSLVKPYADSFILKSRNILTIPDLFEEKNLTLEYHQLIKICSQT 619
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 30.3 bits (65), Expect = 1.8
Identities = 28/118 (23%), Positives = 50/118 (42%)
Frame = -3
Query: 733 ERKAASRNTSVQGNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKAL 554
E++ S ++ I K++ +K K E + L V Y ++V+E+ +
Sbjct: 1203 EKELESLKEELEEQIAKKREQLAKEAGAKRQKLKEEYEGKLRV---IYEELVSERSKNK- 1258
Query: 553 AEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGIEIDDTKI 380
E +N+N L + + LL K KK ++ E KEL + E D+ K+
Sbjct: 1259 -ELMNQNNQLSQKVKLLEGVTTKQKKDIERVKQMEEKLKELERQSKQSE--ETDNPKV 1313
>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
Length = 825
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = -3
Query: 574 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGIEI 395
E RK+L E +ENE L L EEN K + + + ++D D T EI
Sbjct: 368 EALRKSLHEVEHENEELSDENRALDEENAKLTEEKRTLEDTVNKLRAQINDTLDTTLEEI 427
Query: 394 DDTKICNGTIEN 359
+ N +E+
Sbjct: 428 EHLHSFNEELES 439
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = -3
Query: 574 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGIEI 395
E RK+L E +ENE L L EEN K + + + ++D D T EI
Sbjct: 346 EALRKSLHEVEHENEELSDENRALDEENAKLTEEKRTLEDTVNKLRAQINDTLDTTLEEI 405
Query: 394 DDTKICNGTIEN 359
+ N +E+
Sbjct: 406 EHLHSFNEELES 417
>SB_36683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 586 KVVAEKRRKALAEALNENEILHKSLSLLTEE 494
+VVAEKR L L N +LH+ S EE
Sbjct: 355 RVVAEKRLSYLKHRLERNPVLHQKYSKTVEE 385
>SB_20314| Best HMM Match : RVT_1 (HMM E-Value=1e-32)
Length = 1556
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD---AADDTGIEI 395
R L +N I + LL+EENL +KK D A+S +E + M+D A +E+
Sbjct: 492 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMADLQSAPSTLNVEL 547
Query: 394 DDTKI 380
+ K+
Sbjct: 548 NGLKV 552
>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1829
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 586 KVVAEKRRKALAEALNENEILHKSLSLLTEE 494
+VVAEKR L L N +LH+ S EE
Sbjct: 1118 RVVAEKRLSYLKHRLERNPVLHQKYSKTVEE 1148
>SB_21717| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.64)
Length = 499
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/40 (32%), Positives = 27/40 (67%)
Frame = -3
Query: 583 VVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDE 464
VV+E++ + + + +NE + K+ + +E LKY+KL++E
Sbjct: 459 VVSEEQARNIKQFINEAKEGRKTHKDIEQEALKYEKLMEE 498
>SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09)
Length = 539
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 580 VAEKRRKALAEALNENEILHK---SLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADD 410
V K KAL+E + N+ LH SL+ L ++N + + NS ++ K +D ++
Sbjct: 219 VGAKTMKALSEVMEVNKTLHSLDLSLNSLNDKNTTPFFIALKGNSSLKELKMSYNDISEV 278
Query: 409 TGIEIDDTKICNGTIE 362
G + + N +E
Sbjct: 279 AGFRLGGSLAVNKGLE 294
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 562 KALAEALN-ENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGIEIDDT 386
K L + LN +NE + K +LTE + +L E +F E K ++ +DT E+D
Sbjct: 209 KTLQDELNSKNEEIGKLRPMLTERDSMIAELRSELATFQE-NKNMLLSTLEDTRNELDGV 267
Query: 385 K 383
K
Sbjct: 268 K 268
>SB_54590| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1309
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDCLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 574 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
EK+ L + E+E +H+S S L K K+ L E+ ++ C + D
Sbjct: 1204 EKKDNRLEQLTMESEEMHRSASSLKAIVDKIKERLAESEDRVDACSSYIED 1254
>SB_57243| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 341
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 16 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 59
>SB_56859| Best HMM Match : rve (HMM E-Value=4.8e-35)
Length = 1671
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 308 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 351
>SB_52324| Best HMM Match : Retrotrans_gag (HMM E-Value=0.97)
Length = 193
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_43121| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 1037
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_40877| Best HMM Match : RVT_1 (HMM E-Value=2.9e-28)
Length = 734
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_34233| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 216
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 16 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 59
>SB_32124| Best HMM Match : K-box (HMM E-Value=4.1)
Length = 207
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = -3
Query: 607 VPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELM 428
+PS +K RK LA+ +++NEIL K + L + + L++ IE KE+
Sbjct: 29 IPSNDRLDNENQKLRKELADRVDQNEILLKQVKELEKVRDEQMDDLEDQYKEIEHLKEI- 87
Query: 427 SDAADDTGIEI 395
++ ++ +E+
Sbjct: 88 NEELNNRNVEL 98
>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 82 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 125
>SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)
Length = 1602
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 585 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 628
>SB_18449| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 624
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_697| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 603
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 16 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 59
>SB_411| Best HMM Match : RVT_1 (HMM E-Value=2.5e-29)
Length = 730
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 16 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 59
>SB_53357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_53290| Best HMM Match : RVT_1 (HMM E-Value=3.8e-31)
Length = 1090
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_48461| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 327
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 16 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 59
>SB_45719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 27.9 bits (59), Expect = 9.5
Identities = 26/93 (27%), Positives = 46/93 (49%)
Frame = -3
Query: 688 VTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLS 509
V + + S+ +Q +++ E+ ++TY VA K+ K L+E L+E ++L +
Sbjct: 116 VDRARTDSRDLQKQIEQQ-RESMAMNRGGADTYKSAVA-KKNKELSEYLDELKMLQE--- 170
Query: 508 LLTEENLKYKKLLDEANSFIEVCKELMSDAADD 410
T E L+ K LDE+ +E M AD+
Sbjct: 171 --TNEELEMK--LDESKRELEAATTEMDKIADE 199
>SB_45268| Best HMM Match : Retrotrans_gag (HMM E-Value=0.97)
Length = 193
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)
Length = 1845
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 118 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 161
>SB_28151| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 410
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 16 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 59
>SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32)
Length = 779
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_27381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1392
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 117 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 160
>SB_24280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 1597
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
Length = 1381
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = -3
Query: 607 VPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELM 428
+PS +K RK LA+ +++NEIL K + L + + L++ IE KE+
Sbjct: 766 IPSNDRLDNENQKLRKELADRVDQNEILLKQVKELEKVRDEQMDDLEDQYKEIEHLKEI- 824
Query: 427 SDAADDTGIEI 395
++ ++ +E+
Sbjct: 825 NEELNNRNVEL 835
>SB_4461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 133 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 176
>SB_3870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 199 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 242
>SB_3083| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 295
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -3
Query: 565 RKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
R L +N I + LL+EENL +KK D A+S +E + M+D
Sbjct: 75 RDRLVSGINNERIQRR---LLSEENLTFKKAYDIASS-METTAQHMAD 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,545
Number of Sequences: 59808
Number of extensions: 283599
Number of successful extensions: 751
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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