Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c24r
(768 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27220.1 68418.m03247 protein transport protein-related low s... 30 1.5
At3g22220.1 68416.m02803 hAT dimerisation domain-containing prot... 30 1.5
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 30 1.5
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038... 29 2.6
At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR ... 29 3.4
At1g59124.1 68414.m06672 disease resistance protein (CC-NBS-LRR ... 29 3.4
At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR ... 29 3.4
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r... 29 3.4
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode... 29 4.5
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 28 6.0
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 28 6.0
At4g02300.1 68417.m00311 pectinesterase family protein contains ... 28 6.0
At2g24140.1 68415.m02884 expressed protein contains Pfam PF04576... 28 6.0
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr... 28 6.0
At1g05070.1 68414.m00509 expressed protein 28 7.9
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 5/121 (4%)
Frame = -3
Query: 739 LVERKAASRNTSVQGNIVTKKKNSSKSIQVNLDKWISENDLCLE--VPSETYWKVVAE-- 572
L ER++ QG + K K + + ++L++ E ++ +E S+T + +AE
Sbjct: 285 LFERRSLEL-IKTQGEVELKGKQLEQ-MDIDLERHRGEVNVVMEHLEKSQTRSRELAEEI 342
Query: 571 -KRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGIEI 395
++RK L L++ K++ L+ EE +KLLD +S EL+S + G+ +
Sbjct: 343 ERKRKELTAVLDKTAEYGKTIELVEEELALQQKLLDIRSS------ELVSKKKELDGLSL 396
Query: 394 D 392
D
Sbjct: 397 D 397
>At3g22220.1 68416.m02803 hAT dimerisation domain-containing protein
contains Pfam profiles PF04937: Protein of unknown
function (DUF 659), PF05699 hAT family dimerisation
domain
Length = 761
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 646 LDKWISENDLCLEVPSETYWKVVA-EKRRKALAEALNENEIL 524
L+ W+S N +C+E + WK + KR + +A ++E E L
Sbjct: 692 LEDWVSRNQVCIEGNGSSDWKSLEFIKRSEEVAVVIDETEDL 733
>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 620
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = -3
Query: 598 ETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
E WK + +K +E N + HK +++ K K + NS +E K +M+D
Sbjct: 224 EVRWKTIEKKSSGTKSEPSNLATLAHKDIAIPEPVAKKRKMNAVKRNSLLEPAKRVMTD 282
>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
Nuf2 family domain; similar to Myosin-like protein NUF2
(Nuclear filament-containing protein 2) (Nuclear
division protein nuf2) (Swiss-Prot:Q10173)
[Schizosaccharomyces pombe]
Length = 974
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Frame = -3
Query: 703 VQGNIVTKKK--NSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENE 530
+QG + KK +K + + E LEV + EK KAL + L+E+
Sbjct: 251 LQGALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKVTNAKTVEKEFKALKDKLSEDG 310
Query: 529 ILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGIEIDDTKI 380
+ +KSL E + K L++ N ++ ++ + DD ++++ K+
Sbjct: 311 VAYKSLEAKVVERERIGK-LEQLNESLKQLEKEKAVMFDDWTKQLNELKV 359
>At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1049
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -3
Query: 706 SVQGNIVTKKKNSSKSIQVNLDKWISEN-DLCLEV-PSETYWKVVAEKRRKALAEALNEN 533
++QG ++ + +SKS+ V D W E+ +L + P WKV+ R +++A N +
Sbjct: 254 TLQGELI-RLLETSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTS 312
Query: 532 EILHKSLSLLTEEN 491
I K L TE++
Sbjct: 313 YINFKPECLTTEDS 326
>At1g59124.1 68414.m06672 disease resistance protein (CC-NBS-LRR
class), putative / PRM1 homolog, putative domain
signature CC-NBS-LRR exists, suggestive of a disease
resistance protein; identical to cDNA RXF10 mRNA for
PRM1 homolog, partial cds GI:6520172; contains Pfam
profiles PF00931: NB-ARC domain and PF00560: Leucine
Rich Repeat
Length = 855
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -3
Query: 706 SVQGNIVTKKKNSSKSIQVNLDKWISEN-DLCLEV-PSETYWKVVAEKRRKALAEALNEN 533
++QG ++ + +SKS+ V D W E+ +L + P WKV+ R +++A N +
Sbjct: 254 TLQGELI-RLLETSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTS 312
Query: 532 EILHKSLSLLTEEN 491
I K L TE++
Sbjct: 313 YINFKPECLTTEDS 326
>At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR
class), putative / PRM1 homolog, putative similar to
disease resistance protein rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631; identical to cDNA RF45 mRNA for
PRM1 homolog, partial cds GI:6520196
Length = 1017
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -3
Query: 706 SVQGNIVTKKKNSSKSIQVNLDKWISEN-DLCLEV-PSETYWKVVAEKRRKALAEALNEN 533
++QG ++ + +SKS+ V D W E+ +L + P WKV+ R +++A N +
Sbjct: 254 TLQGELI-RLLETSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTS 312
Query: 532 EILHKSLSLLTEEN 491
I K L TE++
Sbjct: 313 YINFKPECLTTEDS 326
>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
(API5)-related contains weak hit to Pfam profile
PF05918: Apoptosis inhibitory protein 5 (API5)
Length = 660
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/71 (26%), Positives = 31/71 (43%)
Frame = -3
Query: 580 VAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGI 401
+ R K L L +++ KSL LLT + L D + + + + D +
Sbjct: 219 ITRARLKKLDTTLAKDDKKVKSLCLLTGLIYFFYLLRDSTCPIAPIRSDALESVSKDCKL 278
Query: 400 EIDDTKICNGT 368
+DDT IC+ T
Sbjct: 279 NLDDTGICDLT 289
>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
protodermal factor 2 (PDF2) identical to GP|14276060|
protodermal factor2 (GI:14276060)
Length = 743
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -3
Query: 622 DLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEA 461
DL LE +W + KA +E +EN+IL L EN +YK+ L A
Sbjct: 98 DLNLEPLQVKFWFQNKRTQMKAQSER-HENQILKSDNDKLRAENNRYKEALSNA 150
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Frame = -3
Query: 613 LEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFI-EVCK 437
L+ S+T KV+ ++RK E EIL K ++LL + L+ N FI + K
Sbjct: 250 LKYHSQTVGKVIGGEKRK------TEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLK 303
Query: 436 ELMSDAAD---DTGIEIDDTKICN 374
L+ D AD + E D KI N
Sbjct: 304 FLVMDEADRILEQNFEEDLKKILN 327
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 589 WKVVAEKRRKALAEALNENEI-LHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 422
WK EK L + NE +HK ++L ++ L ++ +EA+ + KEL+ +
Sbjct: 696 WKASREKEVMQLKKEGRRNEYEMHKLMALNQKQKLVLQRKTEEASQVTKRLKELLDN 752
>At4g02300.1 68417.m00311 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 532
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = -3
Query: 691 IVTKKKNSSKSIQVNLD--KWISEND-LCLEVP 602
++++KK S KS +V+++ W+SEND LE P
Sbjct: 182 VISRKKPSPKSSEVDVEYPSWLSENDQRLLEAP 214
>At2g24140.1 68415.m02884 expressed protein contains Pfam PF04576:
Protein of unknown function, DUF593
Length = 273
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 511 SLLTEENLKYKKLLDEANSFIEVCKELMSDAADDTGIEI 395
+LL E +YK++++E S +E+ EL+ D +EI
Sbjct: 12 ALLAMEASQYKRMVEERMSHVELSMELLEDLNYQKEVEI 50
>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
protein / kinesin motor family protein similar to
kinesin-like protein GB:CAB41097 GI:5541717 from
[Arabidopsis thaliana]; contains Pfam profiles PF00225:
Kinesin motor domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 894
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -3
Query: 676 KNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTE 497
K+ SK ++V LDK I+EN+ L+ + ++ + + + N E L K
Sbjct: 415 KSLSKKLEVQLDKVIAENERQLKAFDDDVERINRQAQNRISEVEKNFAEALEKEKLKCQM 474
Query: 496 ENLKYKKLLDE 464
E ++ K L+E
Sbjct: 475 EYMESVKKLEE 485
>At1g05070.1 68414.m00509 expressed protein
Length = 184
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -3
Query: 610 EVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKEL 431
E + Y +++ E+ + AE+L +++ L + Y+K D+ NS +E C+E
Sbjct: 80 EDTEKNYAELLTEELKLREAESLEKHKRADMGLLEAKKVTSSYQKEADKCNSGMETCEEA 139
Query: 430 MSDA 419
A
Sbjct: 140 REKA 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,343,334
Number of Sequences: 28952
Number of extensions: 204684
Number of successful extensions: 568
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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