Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c24f
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    28   1.1  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    27   1.8  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    26   3.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   7.4  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    25   9.8  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.8  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   9.8  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +3

Query: 288  ESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISEN 467
            E+  + NTA+  + S+D  ++       I +YFSP   +T  K S   + V L+++  E 
Sbjct: 940  ENTSSPNTASNPVWSIDNSVITELLPKQIWDYFSPNFYLTFWKLSLYDVFVPLERYEFER 999

Query: 468  DLCLEVPSET 497
                +   +T
Sbjct: 1000 SRAFDQIRQT 1009


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 435 QVNLDKWISENDLC-LEVPSETYWKVVAEK 521
           ++N D W  ENDL   ++P E Y K+ + +
Sbjct: 76  KINFDAWSFENDLSDNDMPKENYLKIFSNQ 105


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = -3

Query: 241 DVRRNRALVIIKTCLNVYRGFLNIKMPTVKIDSLVIYLNRIDKKKNN*LRKEYTKKTKLN 62
           D+ RNR L    + L+V  G +   + T  I S + +LN ID +K    R+E   + +++
Sbjct: 681 DIHRNRRL----SQLSV-TGRIPHSLATKSIHSFLKHLNTIDSQKAQEWRREINNQFQVS 735

Query: 61  *INEKEINVST*LLH 17
            IN  + +     +H
Sbjct: 736 NINSTDRDTKQPKMH 750


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 288 ESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKW 455
           + +I  +  TT       D+   RK+ + +EY     IV K  NS  S++  L KW
Sbjct: 256 DREIREDPTTTREDIEAMDIEKERKRENYEEYKQVDRIVAKHLNSDGSVEY-LVKW 310


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +3

Query: 285 EESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPR-NIVTKKKNSSKSIQVNLDKWIS 461
           +++KIN +     + S D          SI    S   N V   K SSK I+VN    + 
Sbjct: 266 DKAKINGSVHWVNISSSDDSTFYSVNLESITVTNSTSSNNVQSSKRSSKDIEVNTTVTLD 325

Query: 462 ENDLCLEVPSET 497
              + + +P +T
Sbjct: 326 TGTVYIYLPEDT 337


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/51 (23%), Positives = 30/51 (58%)
 Frame = -3

Query: 388 LKYSLMLPFFRPANKSLSTDFSIVVAVFEFILLSSPECSLIMNKIMNQSDV 236
           LKY ++L ++  ++ +   + + +V  F+F    S E ++I+++ +N + V
Sbjct: 356 LKYKILLIYYHKSSSTYKNNIAAIVPSFDF----SNEEAVILSQTINSNIV 402


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 223 ALVIIKTCLNVYRGFLNIKMPTVKIDSLVIYL 128
           A  +I    N  +GF+N  M T  I S ++YL
Sbjct: 222 AFSVINEVRNFSQGFVNFTMFTAIISSTLLYL 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,988
Number of Sequences: 5004
Number of extensions: 34254
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)