Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c24f
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1992| Best HMM Match : Geminin (HMM E-Value=0.0018)                 33   0.16 
SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_1992| Best HMM Match : Geminin (HMM E-Value=0.0018)
          Length = 155

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
 Frame = +3

Query: 411 KKNSSKSIQVNLDKWISENDLCL---EVPSETYWKVVAEKRRKALAEAL 548
           K++SS+ +  +  K +S+    L   E   E+YW+++AE+RR AL E L
Sbjct: 77  KRSSSEQVTDDDKKSVSDEAFALMIQEPAPESYWQLLAEERRLALQETL 125


>SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1219

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 285 EESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWI-S 461
           ++ +++ N A  I K + K +L   +KG         NI+  +KN          +++  
Sbjct: 160 KKKQLHENEARKIFKKIVKGVLHCHRKGIAHRDLKLENILLSRKNEPIISDFGFARYVGG 219

Query: 462 ENDLCLEVP-SETY 500
            +D C+  P S T+
Sbjct: 220 SSDTCMTRPRSNTF 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,306
Number of Sequences: 59808
Number of extensions: 211367
Number of successful extensions: 653
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)