Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c24f
         (552 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005389-1|AAH05389.1|  209|Homo sapiens geminin, DNA replicatio...    40   0.004
BC005185-1|AAH05185.1|  209|Homo sapiens geminin, DNA replicatio...    40   0.004
AL133264-4|CAC21511.1|  205|Homo sapiens RP3-369A17.3 protein.         40   0.004
AK222992-1|BAD96712.1|  208|Homo sapiens geminin variant protein.      40   0.004
AF067855-1|AAC39787.1|  209|Homo sapiens geminin protein.              40   0.004
U76638-1|AAB38316.1|  777|Homo sapiens BRCA1-associated RING dom...    31   3.6  
BC126428-1|AAI26429.1|  777|Homo sapiens BRCA1 associated RING d...    31   3.6  
BC126426-1|AAI26427.1|  777|Homo sapiens BRCA1 associated RING d...    31   3.6  
AK223409-1|BAD97129.1|  777|Homo sapiens BRCA1 associated RING d...    31   3.6  
AF038042-1|AAB99978.1|  777|Homo sapiens BRCA1-associated RING d...    31   3.6  
AC016708-1|AAX93130.1|  777|Homo sapiens unknown protein.              31   3.6  

>BC005389-1|AAH05389.1|  209|Homo sapiens geminin, DNA replication
           inhibitor protein.
          Length = 209

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/48 (50%), Positives = 27/48 (56%)
 Frame = +3

Query: 405 TKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEAL 548
           ++ KN     Q + D  I EN      PS  YWK VAEKRRKAL EAL
Sbjct: 73  SENKNLGGVTQESFDLMIKEN------PSSQYWKEVAEKRRKALYEAL 114


>BC005185-1|AAH05185.1|  209|Homo sapiens geminin, DNA replication
           inhibitor protein.
          Length = 209

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/48 (50%), Positives = 27/48 (56%)
 Frame = +3

Query: 405 TKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEAL 548
           ++ KN     Q + D  I EN      PS  YWK VAEKRRKAL EAL
Sbjct: 73  SENKNLGGVTQESFDLMIKEN------PSSQYWKEVAEKRRKALYEAL 114


>AL133264-4|CAC21511.1|  205|Homo sapiens RP3-369A17.3 protein.
          Length = 205

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/48 (50%), Positives = 27/48 (56%)
 Frame = +3

Query: 405 TKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEAL 548
           ++ KN     Q + D  I EN      PS  YWK VAEKRRKAL EAL
Sbjct: 69  SENKNLGGVTQESFDLMIKEN------PSSQYWKEVAEKRRKALYEAL 110


>AK222992-1|BAD96712.1|  208|Homo sapiens geminin variant protein.
          Length = 208

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/48 (50%), Positives = 27/48 (56%)
 Frame = +3

Query: 405 TKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEAL 548
           ++ KN     Q + D  I EN      PS  YWK VAEKRRKAL EAL
Sbjct: 72  SENKNLGGVTQESFDLMIKEN------PSSQYWKEVAEKRRKALYEAL 113


>AF067855-1|AAC39787.1|  209|Homo sapiens geminin protein.
          Length = 209

 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/48 (50%), Positives = 27/48 (56%)
 Frame = +3

Query: 405 TKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEAL 548
           ++ KN     Q + D  I EN      PS  YWK VAEKRRKAL EAL
Sbjct: 73  SENKNLGGVTQESFDLMIKEN------PSSQYWKEVAEKRRKALYEAL 114


>U76638-1|AAB38316.1|  777|Homo sapiens BRCA1-associated RING domain
           protein protein.
          Length = 777

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 351 AGRKKGSIKEYFSPRNIVTKKKNSSKSIQVN--LDKWISENDLCLEVPSETYWKVVAEKR 524
           AG KK SIK +FSPR+   +   S  S+Q    + K  S      E  S +    V+E+ 
Sbjct: 136 AGNKKNSIKMWFSPRSKKVRYVVSKASVQTQPAIKKDASAQQDSYEFVSPSPPADVSERA 195

Query: 525 RKALAEA 545
           +KA A +
Sbjct: 196 KKASARS 202


>BC126428-1|AAI26429.1|  777|Homo sapiens BRCA1 associated RING
           domain 1 protein.
          Length = 777

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 351 AGRKKGSIKEYFSPRNIVTKKKNSSKSIQVN--LDKWISENDLCLEVPSETYWKVVAEKR 524
           AG KK SIK +FSPR+   +   S  S+Q    + K  S      E  S +    V+E+ 
Sbjct: 136 AGNKKNSIKMWFSPRSKKVRYVVSKASVQTQPAIKKDASAQQDSYEFVSPSPPADVSERA 195

Query: 525 RKALAEA 545
           +KA A +
Sbjct: 196 KKASARS 202


>BC126426-1|AAI26427.1|  777|Homo sapiens BRCA1 associated RING
           domain 1 protein.
          Length = 777

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 351 AGRKKGSIKEYFSPRNIVTKKKNSSKSIQVN--LDKWISENDLCLEVPSETYWKVVAEKR 524
           AG KK SIK +FSPR+   +   S  S+Q    + K  S      E  S +    V+E+ 
Sbjct: 136 AGNKKNSIKMWFSPRSKKVRYVVSKASVQTQPAIKKDASAQQDSYEFVSPSPPADVSERA 195

Query: 525 RKALAEA 545
           +KA A +
Sbjct: 196 KKASARS 202


>AK223409-1|BAD97129.1|  777|Homo sapiens BRCA1 associated RING
           domain 1 variant protein.
          Length = 777

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 351 AGRKKGSIKEYFSPRNIVTKKKNSSKSIQVN--LDKWISENDLCLEVPSETYWKVVAEKR 524
           AG KK SIK +FSPR+   +   S  S+Q    + K  S      E  S +    V+E+ 
Sbjct: 136 AGNKKNSIKMWFSPRSKKVRYVVSKASVQTQPAIKKDASAQQDSYEFVSPSPPADVSERA 195

Query: 525 RKALAEA 545
           +KA A +
Sbjct: 196 KKASARS 202


>AF038042-1|AAB99978.1|  777|Homo sapiens BRCA1-associated RING
           domain protein protein.
          Length = 777

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 351 AGRKKGSIKEYFSPRNIVTKKKNSSKSIQVN--LDKWISENDLCLEVPSETYWKVVAEKR 524
           AG KK SIK +FSPR+   +   S  S+Q    + K  S      E  S +    V+E+ 
Sbjct: 136 AGNKKNSIKMWFSPRSKKVRYVVSKASVQTQPAIKKDASAQQDSYEFVSPSPPADVSERA 195

Query: 525 RKALAEA 545
           +KA A +
Sbjct: 196 KKASARS 202


>AC016708-1|AAX93130.1|  777|Homo sapiens unknown protein.
          Length = 777

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 351 AGRKKGSIKEYFSPRNIVTKKKNSSKSIQVN--LDKWISENDLCLEVPSETYWKVVAEKR 524
           AG KK SIK +FSPR+   +   S  S+Q    + K  S      E  S +    V+E+ 
Sbjct: 136 AGNKKNSIKMWFSPRSKKVRYVVSKASVQTQPAIKKDASAQQDSYEFVSPSPPADVSERA 195

Query: 525 RKALAEA 545
           +KA A +
Sbjct: 196 KKASARS 202


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,161,219
Number of Sequences: 237096
Number of extensions: 1004475
Number of successful extensions: 5939
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5939
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)