Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c24f
         (552 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095203-1|AAM12296.1|  192|Drosophila melanogaster RE66227p pro...    33   0.34 
AF407275-1|AAK96219.1|  192|Drosophila melanogaster geminin prot...    33   0.34 
AE013599-188|AAF57366.1|  192|Drosophila melanogaster CG3183-PA ...    33   0.34 
BT025068-1|ABE73239.1|  154|Drosophila melanogaster IP15503p pro...    29   5.5  

>AY095203-1|AAM12296.1|  192|Drosophila melanogaster RE66227p
           protein.
          Length = 192

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 441 NLDKWISENDLCLEV-PSETYWKVVAEKRRKALAEAL 548
           N DK I+  DL     P E Y+K++AE+RR AL ++L
Sbjct: 97  NADKPITAEDLTSTAEPGENYYKLLAEQRRLALEDSL 133


>AF407275-1|AAK96219.1|  192|Drosophila melanogaster geminin
           protein.
          Length = 192

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 441 NLDKWISENDLCLEV-PSETYWKVVAEKRRKALAEAL 548
           N DK I+  DL     P E Y+K++AE+RR AL ++L
Sbjct: 97  NADKPITAEDLTSTAEPGENYYKLLAEQRRLALEDSL 133


>AE013599-188|AAF57366.1|  192|Drosophila melanogaster CG3183-PA
           protein.
          Length = 192

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 441 NLDKWISENDLCLEV-PSETYWKVVAEKRRKALAEAL 548
           N DK I+  DL     P E Y+K++AE+RR AL ++L
Sbjct: 97  NADKPITAEDLTSTAEPGENYYKLLAEQRRLALEDSL 133


>BT025068-1|ABE73239.1|  154|Drosophila melanogaster IP15503p
           protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 339 KDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISE--NDL 473
           KD++   KK   KE++   N++  KKNS + IQ  + + + E  ND+
Sbjct: 94  KDMVFRVKKKIAKEHWVNENVIQYKKNSMRHIQGIVSECLQEECNDI 140


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,781,541
Number of Sequences: 53049
Number of extensions: 309145
Number of successful extensions: 851
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2110522698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)