Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c24f
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81589-1|CAB04717.1| 272|Caenorhabditis elegans Hypothetical pr... 32 0.32
U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical pr... 32 0.32
Z83103-3|CAB05473.1| 376|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF039048-10|AAB94240.2| 421|Caenorhabditis elegans Hypothetical... 28 5.1
AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical ... 27 6.8
AC024777-4|AAF60561.3| 627|Caenorhabditis elegans Hypothetical ... 27 6.8
Z82260-11|CAB05139.1| 359|Caenorhabditis elegans Hypothetical p... 27 9.0
>Z81589-1|CAB04717.1| 272|Caenorhabditis elegans Hypothetical
protein T08G5.1 protein.
Length = 272
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 306 NTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLD 449
NT+T+ ++D+ R SIK + PRNI + ++ S+ I+V+ D
Sbjct: 136 NTSTSRNTQNNEDVTVLRNFNSIKHHQKPRNIAYRPRHHSRKIRVHQD 183
>U39997-9|AAA81101.2| 468|Caenorhabditis elegans Hypothetical
protein F56D1.1 protein.
Length = 468
Score = 31.9 bits (69), Expect = 0.32
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 273 EHSGEESKINSNTATTILKSVDKDLLAGRKK--GSIKEYFSPRNIVTKKKNSSKSIQVNL 446
E G + NS ++ V+K+ +A RK+ G K+ F P KK ++ ++
Sbjct: 39 EEDGNSERSNSKVCIEEVEEVEKEEIASRKRKRGKTKDEFHPCPFCEKKFRYPNKLREHI 98
Query: 447 DKWISENDLCLEVPSETYWKVVAEKR 524
S CLE + T + E R
Sbjct: 99 KIHDSNRYQCLECSTITKFGTYGELR 124
>Z83103-3|CAB05473.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.3 protein.
Length = 376
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = -3
Query: 199 LNVYRGFLNIKMPTVKIDSLVIYLNRIDKKKNN*LRKEYTKK 74
++VY + +++ +KI+ Y N D K+NN LR EYT+K
Sbjct: 74 MSVYNRSITLQLERMKIE----YFN-FDPKENNILRTEYTEK 110
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 15 TCNSYVLTFISFSLI*FNLVFLVYSFLNQLFFFLSIRFK*MTKLS 149
T + ++ F+ L F +VFL SF+N LS+ F+ +T+++
Sbjct: 20 TPSHFLFCFLPLILF-FKMVFLFCSFINNQMMVLSVTFRTLTQVN 63
>Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical
protein F27D4.4a protein.
Length = 374
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 317 NYTKISRQRFIGWSKERQHQGILQSKEYCD*EEKFI*IYSSKFR*MDLRE 466
N TK++ Q FI W K++ + + KE D +EK I S K M R+
Sbjct: 236 NLTKLTLQTFIAWKKKKLRE--RKEKEEADLKEKKEKIKSGKHNGMSGRD 283
>Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical
protein R11A5.4b protein.
Length = 582
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 281 WRRKQNKFKHCNNYTKISR 337
W K+ + +HCN YT+ SR
Sbjct: 548 WMLKRRESRHCNYYTRFSR 566
>AF039048-10|AAB94240.2| 421|Caenorhabditis elegans Hypothetical
protein F16B4.9 protein.
Length = 421
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +3
Query: 291 SKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISEND 470
S + + T T + VD LLAG+ + + + P + KK N+ + ++++L +W S+
Sbjct: 132 SSMLTPTITKPKRIVDVTLLAGKIQKILNDKKIPEHPRLKKLNNLERLELSLREWRSKQK 191
Query: 471 L 473
+
Sbjct: 192 I 192
>AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical
protein Y106G6G.2 protein.
Length = 821
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 300 NSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCL 479
N + T L++V D GR KG + + + I T++ + + N+ +W++ + +
Sbjct: 611 NVSQITPTLRNVINDF-DGRAKGLLSDVEKLKRIKTRQDEVECTEEKNVARWMTSSAWQM 669
Query: 480 EVPSETYWKVVAEKR--RKALAEALN 551
+ + + V EKR R+ + EA++
Sbjct: 670 IIDVLSTFLAVKEKRKTREKIREAIS 695
>AC024777-4|AAF60561.3| 627|Caenorhabditis elegans Hypothetical
protein Y42H9AR.4 protein.
Length = 627
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 214 IIKTCLNVYRGFLNIKMPTVKIDSLVIYLNRIDKKKNN*LRKEYTK 77
+ K +N+YR F N K+P + S I L +K+N+ R Y+K
Sbjct: 562 LFKLGVNMYRDFPNRKLPGI---SETILLKHSLRKRNHLARTHYSK 604
>Z82260-11|CAB05139.1| 359|Caenorhabditis elegans Hypothetical
protein C32H11.13 protein.
Length = 359
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 242 TLIHY--FIHNE*AFWRRKQNKFKHCNNYTKISRQ 340
T +HY FI N +WRRK++ F C N I+++
Sbjct: 19 TFLHYLRFILN---WWRRKESPFSVCKNGNVINKR 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,725,984
Number of Sequences: 27780
Number of extensions: 179392
Number of successful extensions: 500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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