Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c24f
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   3.6  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   4.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 3   TYLPTCNSYVLTFISF 50
           TY+PTC   +++++SF
Sbjct: 251 TYIPTCLIVIMSWVSF 266


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 285 EESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSK 428
           +E+ +  N    ILKS+   L      G +     P+NI+  K    K
Sbjct: 148 DEAILIKNERICILKSITCALQFCHNAGIVHADVKPKNILMSKNGQPK 195


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 30  VLTFISFSLI*FNLVF 77
           ++ F SFSL+ FNL+F
Sbjct: 138 LIRFKSFSLLNFNLLF 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,667
Number of Sequences: 438
Number of extensions: 2794
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)