Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c24f
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53440.1 68418.m06641 expressed protein                             29   1.6  
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil...    29   2.7  
At4g02300.1 68417.m00311 pectinesterase family protein contains ...    28   3.6  
At4g37320.1 68417.m05285 cytochrome P450 family protein                28   4.8  
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar...    27   6.3  
At2g18910.1 68415.m02206 hydroxyproline-rich glycoprotein family...    27   6.3  
At5g14360.1 68418.m01678 ubiquitin family protein contains INTER...    27   8.3  

>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +3

Query: 273 EHSGEESKINSNTATTILKSVDKDLLAGRKK--GSIK-EYFSPRNIVTKKKNSSKSIQVN 443
           E S +E K    ++TT+  S +      RK+   S+  EY+      + K+   KS +  
Sbjct: 25  ETSLKEKKSKEESSTTVRVSKESGSGDKRKEYYDSVNGEYYEEYTSSSSKRRKGKSGESG 84

Query: 444 LDKWISENDLCLEVPSETYWKVVAEKRRK 530
            D+W  ++D   E   +T  KV +EK RK
Sbjct: 85  SDRWNGKDDDKGESSKKT--KVSSEKSRK 111


>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
            protein / CHD family protein similar to chromatin
            remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
            GI:6478518; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
            (CHRromatin Organization MOdifier)
          Length = 2228

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 270  SEHSGEESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSI 434
            S H+  ES    N  T+    +    LAG   GS +    P N+ + +  SS++I
Sbjct: 2052 SSHNAVESSSQGNPQTSATPPLPPPSLAGETSGSSQPKLPPHNLNSTEPLSSEAI 2106


>At4g02300.1 68417.m00311 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 532

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
 Frame = +3

Query: 399 IVTKKKNSSKSIQVNLD--KWISEND-LCLEVP 488
           ++++KK S KS +V+++   W+SEND   LE P
Sbjct: 182 VISRKKPSPKSSEVDVEYPSWLSENDQRLLEAP 214


>At4g37320.1 68417.m05285 cytochrome P450 family protein 
          Length = 495

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +3

Query: 306 NTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDK 452
           N    +++ +  +++AG   G++ +Y    N VT  +N +K +   LD+
Sbjct: 203 NDEAKLVRELIAEIMAGAGSGNLADYLPSINWVTNFENQTKILGNRLDR 251


>At5g03990.1 68418.m00379 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 302

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = +3

Query: 384 FSPRNIVTKKKNSSK----SIQVNLDKWISENDLCLEVPSETYWKVVAEKR 524
           +S +   T  ++SSK    + ++++  W  E D C  + S  +WKVV  KR
Sbjct: 17  YSRQRGTTMTQSSSKPPLANCKISVPAW--EKDFCAVIGSVPWWKVVEAKR 65


>At2g18910.1 68415.m02206 hydroxyproline-rich glycoprotein family
           protein
          Length = 131

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +3

Query: 339 KDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWK 506
           K + +  + GS+  +F  +N VTK +N+  S+  +L +W   N    +   + Y++
Sbjct: 57  KSVASSDQDGSVLGFF--KNAVTKVQNAHSSVDDHLVRWFGLNQSKYQWALDEYYE 110


>At5g14360.1 68418.m01678 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 163

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 451 NGSQRTTCALKFLLKPIGKLLQKRE 525
           N S  + C +K+ L+P G L+QKR+
Sbjct: 38  NNSSCSNCEIKWELRPGGMLVQKRQ 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,916,612
Number of Sequences: 28952
Number of extensions: 157797
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)