Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c23r
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)               83   2e-16
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)                 31   0.65 
SB_42576| Best HMM Match : VlpA_repeat (HMM E-Value=8.1)               30   1.5  
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_49035| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)                 28   6.1  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   8.0  
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
          Length = 81

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 36/50 (72%), Positives = 45/50 (90%)
 Frame = -2

Query: 295 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKV 146
           S+SLIKQIPR+LGPGLNKAGKFP  ++H E+M QKI++V+ TIKFQMKK+
Sbjct: 28  SDSLIKQIPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKFQMKKI 77


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -2

Query: 136 SVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKST 5
           ++ VGH      E+  N+  +++ L  ++ + W N++SL++K++
Sbjct: 322 AMKVGHTGQEKKEVISNIVEAVSGLAKIIPRGWNNIQSLNIKTS 365


>SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)
          Length = 342

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
 Frame = +2

Query: 359 FQSLSIHTWHIQGFSLVTMLLVSKNA----NLHFRPRYVF*LYSAGETLVLLWVIVLQTN 526
           + S  + TW +   S +T+  +S        LH R + +F +  A   L+++W+I L  N
Sbjct: 100 YMSFELSTWLLLMSSFLTLTAISCERFAALTLHLRYQQMFTMKRAAMALIMIWLISLSLN 159

Query: 527 -LKLYSLQKVTF----------LVLRGLKNGIHALVERVTRH---FRRHFVCQR 646
            ++L  L+ + +          LVL  L N  + L++ V RH    R H V QR
Sbjct: 160 VIRLLLLESLFWCITLTTVSICLVLILLTN--YVLIKAVQRHRKLIRSHQVVQR 211


>SB_42576| Best HMM Match : VlpA_repeat (HMM E-Value=8.1)
          Length = 325

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 277 QIPRLLGPGLNKAGKFPGLLS--HQESMTQKIDEVKGTIKFQMKKV 146
           +IP    P  +K  K+PG ++  HQ     +  E  GTI   MK +
Sbjct: 30  EIPGYYQPCTSKTSKYPGTMNLVHQRHRNTRTSEYPGTINLVMKDI 75


>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +3

Query: 12  FICNDRTFCQC---FLSSDTRKLMERCTF*ASSSGVMSTWPTATERHSTFFIWNLMVPLT 182
           F+ +D TF      FLSSDT  L    TF +S +  +S+  T     STF   +     +
Sbjct: 262 FLSSDTTFLSSDTIFLSSDTTLLSSDSTFLSSDTTFLSSDTTLLSSDSTFLSSDTTFSSS 321

Query: 183 SSIFCVMDS 209
            S F   D+
Sbjct: 322 DSTFVSSDT 330


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 223 LLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKK 44
           L+  ++   ++++ +K  +    KKV   S AV  +  TPD ++  V   +N L SL KK
Sbjct: 629 LIGLKDGGDKELNRLKEELTQVSKKV---SSAVSEMSDTPDNVSNQVEKVVNELKSLKKK 685

Query: 43  H 41
           H
Sbjct: 686 H 686


>SB_49035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/82 (25%), Positives = 33/82 (40%)
 Frame = +3

Query: 48  LSSDTRKLMERCTF*ASSSGVMSTWPTATERHSTFFIWNLMVPLTSSIFCVMDSWWERRP 227
           L +D+  L+  CT   + S +  T  T     ST  + +  +P+T S   V DS      
Sbjct: 95  LVTDSTILVTDCTILVTDSTIPVTDSTIPVTDSTILVTDSTIPVTDSTILVTDSTIPVTD 154

Query: 228 GNLPALFKPGPNKRGICLISDS 293
             +P      P      L++DS
Sbjct: 155 STIPVTDSTIPVTDSTILVTDS 176


>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 52  AVTQGS*WKDAHSEQAHQESCPH 120
           AV+    WK  H+ Q  QESCPH
Sbjct: 103 AVSNPCFWKWIHAHQTAQESCPH 125


>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 383 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 562
           W I    LV  L+ + N +   R ++VF +    E L+ +W +  +T L    +Q   F+
Sbjct: 296 WFIWTAVLVDALIQANNGSWRRRAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 355

Query: 563 V 565
           +
Sbjct: 356 L 356


>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
          Length = 1286

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 75  PSTSLCHCSRNTGRMSD 25
           PS   CHC  N GRM D
Sbjct: 526 PSDPTCHCPSNNGRMKD 542


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -2

Query: 532 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 410
           LQ G K YDP K+K      K KY+  PK+ + C   ++  +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376


>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 578 KNGIHALVERVTRHFRRHFVCQRTTYH 658
           K G+H ++ +VT + RRH++ + T  H
Sbjct: 284 KKGVHMILGQVTGNARRHYIPKFTANH 310


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = +2

Query: 383 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 562
           W I    LV  L+ + N +   + ++VF +    E L+ +W +  +T L    +Q   F+
Sbjct: 395 WFIWFAVLVDALIQANNGSWRRQAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 454

Query: 563 VLRG 574
           +  G
Sbjct: 455 LAVG 458


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 92  SKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLLR-HGL-LVGEKTREFTS 241
           +K I   +H+ + YR   H++HL    +LD I   R  G+ L  E T  + S
Sbjct: 169 NKAIEMVIHLCDHYRVPCHIVHLSSGSALDSIRSARSSGIPLTVETTHHYLS 220


>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 278 ADSPFVGSRFEQSW*IPWSSLPPGVHDAED 189
           +DSP+ G+   + W I  S+ P  VHD  D
Sbjct: 725 SDSPYSGNSSGEDWDIYSSAQPTAVHDLPD 754


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = -2

Query: 532 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 410
           LQ G K YDP K+K      K KY+  PK+ + C   ++  +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,011,203
Number of Sequences: 59808
Number of extensions: 453143
Number of successful extensions: 1121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)