Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c23r
(680 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 250 9e-67
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 250 9e-67
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 248 3e-66
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 244 6e-65
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t... 53 2e-07
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 50 1e-06
At1g06380.1 68414.m00674 ribosomal protein-related similar to PB... 44 7e-05
At5g41880.1 68418.m05099 DNA primase small subunit family contai... 33 0.13
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ... 31 0.71
At2g42710.1 68415.m05289 ribosomal protein L1 family protein 31 0.71
At1g08400.1 68414.m00929 chromosome structural maintenance prote... 30 1.2
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta... 30 1.6
At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related conta... 29 2.2
At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related conta... 29 2.2
At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitam... 29 3.8
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 29 3.8
At1g48980.1 68414.m05491 hypothetical protein 24 4.7
At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 27 8.7
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 250 bits (611), Expect = 9e-67
Identities = 119/208 (57%), Positives = 152/208 (73%)
Frame = -2
Query: 625 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 446
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 445 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 266
M++C+LGD QH +EA+ + + M ASES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 265 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 86
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQN 181
Query: 85 VHLSINFLVSLLKKHWQNVRSLHMKSTM 2
V +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTM 209
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 250 bits (611), Expect = 9e-67
Identities = 119/208 (57%), Positives = 152/208 (73%)
Frame = -2
Query: 625 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 446
SK+ + + E + + S++KKRNF+ETVELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 445 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 266
M++C+LGD QH +EA+ + + M ASES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121
Query: 265 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 86
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +L QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQN 181
Query: 85 VHLSINFLVSLLKKHWQNVRSLHMKSTM 2
V +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTM 209
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 248 bits (606), Expect = 3e-66
Identities = 117/208 (56%), Positives = 151/208 (72%)
Frame = -2
Query: 625 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 446
SK+ + + E + + S+ KKRNF+ET+ELQIGLKNYDPQKDKRFSG+VKL +IPRPK
Sbjct: 2 SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61
Query: 445 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIPR 266
M++C+LGD QH +EA+ + + M ASES+IKQIPR
Sbjct: 62 MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121
Query: 265 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 86
LLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ QN
Sbjct: 122 LLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQN 181
Query: 85 VHLSINFLVSLLKKHWQNVRSLHMKSTM 2
V +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 182 VQMSVNFLVSLLKKNWQNVRCLYLKSTM 209
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 244 bits (596), Expect = 6e-65
Identities = 115/209 (55%), Positives = 152/209 (72%), Gaps = 1/209 (0%)
Frame = -2
Query: 625 SKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 449
SK+ + + E +++++ K+ K RNF ET+ELQIGLKNYDPQKDKRFSG+VKL ++PRP
Sbjct: 2 SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61
Query: 448 KMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQIP 269
KM++C+LGD QH +EA+ + + M ASES+IKQIP
Sbjct: 62 KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIP 121
Query: 268 RLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQ 89
RLLGPGLNKAGKFP L+SHQES+ K++E K T+KFQ+KKVLC+ VAVG++ M ++ Q
Sbjct: 122 RLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQ 181
Query: 88 NVHLSINFLVSLLKKHWQNVRSLHMKSTM 2
NV +S+NFLVSLLKK+WQNVR L++KSTM
Sbjct: 182 NVQMSVNFLVSLLKKNWQNVRCLYLKSTM 210
>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
PBK1 protein (GI:3668141) [Homo sapiens]; weak
similarity to 60S ribosomal protein L10a.
(Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
Length = 372
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/93 (26%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Frame = -2
Query: 286 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 110
+I +P+L+G ++ K P + + + ++I++ G F M+ C ++ V + M
Sbjct: 137 VIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFMRTGSCSAIKVAKLSM 196
Query: 109 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 11
D++ +NV ++N +V +L W+ +RSLH+K
Sbjct: 197 ESDDIVENVTATLNGVVDVLPSRWKYIRSLHLK 229
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = -2
Query: 286 LIKQIPRLLGPGLNKAGKFPGLLS-HQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 110
+I +PR++G + K P L + +I++ G+ F ++ C + VG + M
Sbjct: 157 IIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFFIRTGTCSVIKVGKLSM 216
Query: 109 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 11
E+ +NV ++N LV L W VRSLH+K
Sbjct: 217 DICEITENVMATLNGLVEFLPNKWTYVRSLHLK 249
>At1g06380.1 68414.m00674 ribosomal protein-related similar to PBK1
protein (GI:3668141) {Homo sapiens}; weakly similar to
60S ribosomal protein L10a. (SP:Q963B6) [Fall armyworm]
{Spodoptera frugiperda}
Length = 254
Score = 44.4 bits (100), Expect = 7e-05
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = -2
Query: 286 LIKQIPRLLGPGLNKAGKFPGLLSHQE-SMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDM 110
L+ +P+LLG K K P ++ + S ++I++ + F + C V V + M
Sbjct: 148 LMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFFVGTGTCSVVKVAKLSM 207
Query: 109 TPDELAQNVHLSINFLVSLLKKHWQNVRSLHMK 11
+E+A+NV ++N + L+ W+NV+ H+K
Sbjct: 208 GRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLK 240
>At5g41880.1 68418.m05099 DNA primase small subunit family contains
Pfam profile: PF01896 DNA primase small subunit
Length = 407
Score = 33.5 bits (73), Expect = 0.13
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -2
Query: 646 SLTNKMSSKVSRDTLYECVNAVLQSSKDKK---RNFLETVELQIGLKNYDPQKDKRFSGT 476
S + +S + + +E + LQS ++K R +E + D + K+ +
Sbjct: 275 SARSSLSEEATSLLRWEQLKKALQSKRNKALSLRTCVEEIVFTFTYPRIDLEVSKQMNHL 334
Query: 475 VKLKYIPRPKM-QVCVLGDQQHCDEAKTLNVPCM 377
+K + PK +VCV D +CDE L VP +
Sbjct: 335 LKAPFCVHPKTGRVCVPIDPNNCDEFDPLAVPTL 368
>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis
thaliana]; similar to cytochrome P450, Helianthus
tuberosus, EMBL:HTCYP81L
Length = 500
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 547 LETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVC 434
L V + G+K DP+ +KRF KL++ M VC
Sbjct: 185 LRLVSGKRGVKKSDPESEKRFLDDFKLRFFSSMSMNVC 222
>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
Length = 415
Score = 31.1 bits (67), Expect = 0.71
Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 10/221 (4%)
Frame = -2
Query: 634 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIP 455
K K + +++ + A+ + + K F ET+E + L + + GT+ L +
Sbjct: 177 KPELKHGKKPIFDLMEAIREIKGNAKAKFDETLEAHVRLGIEKGRSELIVRGTLALPHSV 236
Query: 454 RPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXASESLIKQ 275
+ ++V + ++AK + + +
Sbjct: 237 KKDVKVAFFAEGADAEDAKAAGADVVGGLELIEEILKSGKIDFDRCLATPKMMPR--VYK 294
Query: 274 IPRLLGPGLNKAGKFPGLL--SHQESMTQKIDEVK-GTIKFQMKKVLCLSVAVGHVDMTP 104
I R+L N G P S + +T+ + + K G KF+M K L V +G + +
Sbjct: 295 ISRIL----NNHGLMPNPKQGSVTKDVTKAVKDAKAGHTKFRMDKTSILHVPLGKMSFSE 350
Query: 103 DELAQNVHLSINFLV-----SLLK--KHWQNVRSLHMKSTM 2
+ L +NV +N L+ L K K+ V + H+ STM
Sbjct: 351 EALRENVGAFMNALLLAKPAGLKKTSKYAGYVNAFHLCSTM 391
>At1g08400.1 68414.m00929 chromosome structural maintenance
protein-related contains weak similarity to
RAD50-interacting protein 1 [Homo sapiens]
gi|11967435|gb|AAG42101
Length = 804
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 628 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 488
+SKV + N +L DKK ++ ++ L GL+ ++ QK+KR
Sbjct: 232 TSKVEHGEVDSIPNPLLLMQGDKKESYSQSFLLLCGLQQHNTQKEKR 278
>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 738
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 97 LAQNVHLSINFLVSLLKKH 41
+ + VHLS+NF++ L+KKH
Sbjct: 322 IVEGVHLSLNFVMGLMKKH 340
>At3g45090.2 68416.m04862 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 698
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 97 LAQNVHLSINFLVSLLKKH 41
+ + VHLS+NF++ L+KKH
Sbjct: 279 VVEGVHLSLNFVMGLMKKH 297
>At3g45090.1 68416.m04863 2-phosphoglycerate kinase-related contains
weak similarity to 2-phosphoglycerate kinase (GI:467751)
[Methanothermus fervidus]
Length = 717
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = -2
Query: 97 LAQNVHLSINFLVSLLKKH 41
+ + VHLS+NF++ L+KKH
Sbjct: 298 VVEGVHLSLNFVMGLMKKH 316
>At4g32770.1 68417.m04662 tocopherol cyclase, chloroplast / vitamin
E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
identical to SP|Q94FY7 Tocopherol cyclase, chloroplast
precursor (Vitamin E deficient 1) (Sucrose export
defective 1) {Arabidopsis thaliana}
Length = 488
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 447 FGRGMYFSFTVPEKRLSFC 503
F G YF ++PEKR SFC
Sbjct: 91 FFEGWYFRVSIPEKRESFC 109
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +1
Query: 469 ALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEERHSRTRRACHETL*TTFCLSE 645
A+ + HS + EALQS S V +++ SR R H TT L+E
Sbjct: 871 AVMAEERSARKAMHSKRQEIEALQSMISRVKSAASVDDIDSRVRNMEHTMQHTTLSLNE 929
>At1g48980.1 68414.m05491 hypothetical protein
Length = 264
Score = 24.2 bits (50), Expect(2) = 4.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 83 HILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLL 196
H LS+ R+H+ N RK + ++NG L +N+L
Sbjct: 66 HKLSRKQRTHIRAINVKRKRDFVCLEKVNGEL--VNIL 101
Score = 22.6 bits (46), Expect(2) = 4.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 44 FLEQ*HKEVDGKMHILSKLIRS 109
F+ Q E+ K+++LSK IRS
Sbjct: 6 FIRQSELEIASKVNLLSKRIRS 27
>At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 397
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/79 (17%), Positives = 39/79 (49%)
Frame = -2
Query: 628 SSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRP 449
S ++++ +Y+ +L + + + T+E Q+ DPQ+ ++ + Y+P
Sbjct: 57 SLRITKTRIYDTNPQILSAFANSNIEIIVTIENQVLPLLQDPQQATQWVDSHIKPYVPAT 116
Query: 448 KMQVCVLGDQQHCDEAKTL 392
++ ++G++ D+ +L
Sbjct: 117 RITGIMVGNELFTDDDSSL 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,298,173
Number of Sequences: 28952
Number of extensions: 320006
Number of successful extensions: 821
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -