Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c21r
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc... 34 0.019
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 34 0.026
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 32 0.078
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 31 0.24
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 29 0.55
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 29 0.96
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 1.7
SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 26 6.8
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 6.8
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 9.0
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 9.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 9.0
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 9.0
>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
Arg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 34.3 bits (75), Expect = 0.019
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -2
Query: 382 DNFNVLHYVTLDNEVFKVKETMEKI-DFNVKIDYVRLLKSSATEDDALFLLVNNDLVVIK 206
D NVLH + + N + ++ K D NV+ D + ++ +A E+ + F +VN+ V +K
Sbjct: 169 DANNVLHDLMIANAKVGIHTSVAKPKDVNVRDDILSIVNEAANENGSTFEIVNDPKVAVK 228
Query: 205 STGIL 191
+ I+
Sbjct: 229 NADIV 233
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 33.9 bits (74), Expect = 0.026
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Frame = +3
Query: 75 PITYKSGINP*TFLSTAYISNESV-----SLENADTFPKFSTTFNIPVDLITTRSLLTKR 239
PIT S +N T ++++ I N S S+ N+ T STT N IT+ S+L
Sbjct: 3167 PITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTPITSSTTLNTSTP-ITSSSVLNSS 3225
Query: 240 KRASSSVALDFKSLT*SILTLKSIFSIVSFTLNTSLSKVT*CNTLKLSN-ITCLTAFNLS 416
+SS L+ + S L S I S T+ + + +T + L S IT T N S
Sbjct: 3226 TAITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTS 3285
Query: 417 S 419
+
Sbjct: 3286 T 3286
Score = 33.1 bits (72), Expect = 0.045
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 7/126 (5%)
Frame = +3
Query: 63 SAKEPITYKSGINP*TFLSTAYISNESVSLE-----NADTFPKFSTTFNIPVDLITTRSL 227
++ PIT +G+N T ++++ + N S + N+ T ST N IT+ S+
Sbjct: 931 NSSTPITSSTGLNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSTP-ITSSSV 989
Query: 228 LTKRKRASSSVALDFKSLT*SILTLKSIFSIVSFT-LNTSLSKVT*CNTLKLSN-ITCLT 401
L +SS L+ + S L S +I S T LNTS + +T + L S IT T
Sbjct: 990 LNSSTPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTS-TPITSSSVLNSSTPITSST 1048
Query: 402 AFNLSS 419
N S+
Sbjct: 1049 VVNTST 1054
Score = 31.9 bits (69), Expect = 0.10
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Frame = +3
Query: 63 SAKEPITYKSGINP*TFLSTAYISNESV-----SLENADTFPKFSTTFNIPVDLITTRSL 227
++ PIT S +N T ++++ + N S S+ N+ T ST N + ++ +L
Sbjct: 391 NSSTPITSSSILNTSTPITSSSVLNSSTPITSSSILNSSTPITSSTVLNSSTPITSSTAL 450
Query: 228 LTKRKRASSSVALDFKSLT*SILTLKSIFSIVSFTLNTSLSKVT*CNTLKLSN-ITCLTA 404
T SSSV +T S L S I S T+ + + +T + S IT TA
Sbjct: 451 NTSTPITSSSVLNSSTPIT-SSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 509
Query: 405 FNLSS 419
N S+
Sbjct: 510 LNTST 514
Score = 31.1 bits (67), Expect = 0.18
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 6/160 (3%)
Frame = +3
Query: 75 PITYKSGINP*TFLSTAYISNESV-----SLENADTFPKFSTTFNIPVDLITTRSLLTKR 239
PIT S +N T ++++ I N S S+ N+ T ST N + ++ +L T
Sbjct: 3335 PITSSSVLNSSTAITSSSILNSSTPVTSSSVLNSSTPITSSTVVNSSTPITSSTALNTST 3394
Query: 240 KRASSSVALDFKSLT*SILTLKSIFSIVSFTLNTSLSKVT*CNTLKLSNITCLTAFNLSS 419
SSSV +T S + S S LNTS + +T +T+ S+ ++ L+S
Sbjct: 3395 PITSSSVLNSSTPITSSTVVNSSTPITSSTALNTS-TPIT-SSTVVNSSTPITSSSVLNS 3452
Query: 420 KTYLLPFSVTL*AL-LSFVTA*NKSLPFIFVRLITSALKV 536
T + S+ + ++ + N S P +ITS++ +
Sbjct: 3453 STAIASSSILNSSTPITSSSVLNSSTPISSSTVITSSVVI 3492
Score = 27.9 bits (59), Expect = 1.7
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Frame = +3
Query: 63 SAKEPITYKSGINP*TFLSTAYISNESVSLENADTFPKFSTTFNIPVDLITTRSLLTKRK 242
++ PIT S +N T ++++ + N S + + STT N + ++ L +
Sbjct: 3127 NSSTPITSSSILNSSTPITSSTVVNSSTPITS-------STTLNTSTPITSSSVLNSSTA 3179
Query: 243 RASSSVALDFKSLT*SILTLKSIFSIVSFTLNTSLSKVT*CNTLKLSN-ITCLTAFNLSS 419
SSS+ +T S + S S TLNTS + +T + L S IT + N S+
Sbjct: 3180 ITSSSIVNSSTPITSSSVLNSSTPITSSTTLNTS-TPITSSSVLNSSTAITSSSVLNSST 3238
Score = 27.1 bits (57), Expect = 2.9
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Frame = +3
Query: 63 SAKEPITYKSGINP*TFLSTAYISNESV-----SLENADTFPKFSTTFNIPVDLITTRSL 227
++ PIT + +N T ++++ + N S S+ N+ T S+ N + ++ L
Sbjct: 3067 NSSTPITSSTALNTSTPITSSSVLNSSTAITSSSIVNSSTPITSSSVLNSSTAITSSSIL 3126
Query: 228 LTKRKRASSSVALDFKSLT*SILTLKSIFSIVSFTLNTSLSKVT*CNTLKLSN-ITCLTA 404
+ SSS+ +T S + S S TLNTS + +T + L S IT +
Sbjct: 3127 NSSTPITSSSILNSSTPITSSTVVNSSTPITSSTTLNTS-TPITSSSVLNSSTAITSSSI 3185
Query: 405 FNLSS 419
N S+
Sbjct: 3186 VNSST 3190
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 32.3 bits (70), Expect = 0.078
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = -2
Query: 604 IYVASNDGIYVYKTGDKSFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKY 425
++ + +DGI++ +F++ F+ + +L + G D T N T G
Sbjct: 379 LFPSGSDGIHLVVDEKSNFREEN-FQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVK 437
Query: 424 VLDDKLKAVKQVMFDNFN-VLHYVTLDNEVFKVKETMEKIDFN 299
D K VK +M N+N V+ + E + M K+D N
Sbjct: 438 GPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMN 480
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 30.7 bits (66), Expect = 0.24
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 475 VTNDNKAYKVTENG--NKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEVFKV-KETMEKID 305
V N N +K+T+ N +D+ + + +DN +V LD+E+ + KE EK +
Sbjct: 466 VFNSNNKHKMTKQEFINLCDIDELAPEIMEYYYDNITFTPFVNLDDELLLIEKEKNEKYN 525
Query: 304 F 302
F
Sbjct: 526 F 526
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 29.5 bits (63), Expect = 0.55
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 550 FKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNK--YVLDDKLKAVKQVMFDN 377
F Y F D + + N +F+ + ++Y V E+GN YVL D + + QV N
Sbjct: 1001 FIAYIRFYVDTV-VNSENVPIVFHLMQRIKQSYDVIEDGNNYIYVLSDMAQKILQVKSQN 1059
Query: 376 F 374
F
Sbjct: 1060 F 1060
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.7 bits (61), Expect = 0.96
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = +2
Query: 323 LFHFKYFIIQSDI----VQYIEVIKHNL--FDGFQFIIQNVFVTIFSDFVSFIVVCYG 478
LFHF F I S + Y + I H+ F + I + FVT+ DFV + +G
Sbjct: 417 LFHFLLFDIGSGLSGSDYTYEQYINHSAVAFSFTEEIFEKNFVTVLPDFVKLFSISFG 474
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 27.9 bits (59), Expect = 1.7
Identities = 40/197 (20%), Positives = 83/197 (42%), Gaps = 2/197 (1%)
Frame = -2
Query: 709 DNRREKGVYEVDLNLNTTVKILDKGRDLCYDDDSTIYVASNDGIYVYKTGDKSFKKYGTF 530
D+ R + V+ + + + L++G+ +C +Y +N I + +SF G+F
Sbjct: 274 DSIRLRDVHPIRWVEDKEFQKLEEGKSVCL----RLYQRNNGSILAFPRSCRSFALDGSF 329
Query: 529 KADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTL 350
+D I M+G+ YA ++ + Y++ L ++Q+
Sbjct: 330 HSDEIPNFTMSGA--AYA--------RIIIGSHDYMVQQHLLEIEQLQ-------QIAAE 372
Query: 349 DNEVFKVKETMEKIDFNVKIDYVRLLKSSATEDDALFLLVNNDLVVIKSTGI--LKVVEN 176
D ++ +T + + +D + L S E + L + D + ++S + L V++
Sbjct: 373 DISLYGSADTYYERITQILLDRISSLSESVNEQNIKSLQTDIDNLCLQSNSLKQLSEVDD 432
Query: 175 LGKVSAFSKETDSLLIY 125
L VS S+ D+ L Y
Sbjct: 433 LNDVSG-SEIADAYLFY 448
>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 43
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 568 YIHISRHC*LRISCCHHHNINPFLC 642
+IH S HC C +H INP +C
Sbjct: 18 HIHFSHHC------CENHFINPLVC 36
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 5.1
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +3
Query: 99 NP*TFLSTAYISNESVSLENADTFPKFSTTFNIPVDLITTRSLLTKRKRASSSVALDFKS 278
N T ++ Y+S+ S + + +++T+F+ P TT S T A+ V + S
Sbjct: 786 NSSTLATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGV--NSNS 843
Query: 279 LT*SILTLKSIFSIVSFTLNT 341
+T L L+S S+ S T
Sbjct: 844 IT--SLNLESTSSVTSTAYTT 862
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/73 (20%), Positives = 34/73 (46%)
Frame = -2
Query: 517 ISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNFNVLHYVTLDNEV 338
I + ++ SD ++ +KY +D+ +K + +V D++ +L + NE+
Sbjct: 54 IDWSNLSHSDFVQCGVYEDSTNTWLAGASKYKIDE-IKTLPKVPRDHYIILCDSSESNEI 112
Query: 337 FKVKETMEKIDFN 299
K + + DF+
Sbjct: 113 AKFTQVVHSFDFS 125
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 262 ATEDDALFLLVNNDLVVIKSTGILKVV 182
A+ D F ++NN V+ + G LKVV
Sbjct: 453 ASPKDTFFDIINNQKYVVNTDGTLKVV 479
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 9.0
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = -2
Query: 460 KAYKVTENGNKYVLDDKLK--AVKQVMFDNFNVLHYVTLDNEVFKVKETMEKIDFNVKID 287
+ Y + + V D +LK +V Q FNV ++V ++ ++ET + + + K
Sbjct: 61 QTYSLESKSSNLVSDCELKISSVYQSYSSTFNVSNHVPSISKTVNIRETSKHLKHSTKAP 120
Query: 286 YVRLLKSSATEDDAL 242
L +SA E D L
Sbjct: 121 KCS-LPTSALEIDHL 134
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 712 NDNRREKGVYEVDLNLNTTVK 650
N+NR+E + VD LNTTVK
Sbjct: 614 NENRKEYVLRYVDYLLNTTVK 634
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 9.0
Identities = 22/100 (22%), Positives = 48/100 (48%)
Frame = +3
Query: 117 STAYISNESVSLENADTFPKFSTTFNIPVDLITTRSLLTKRKRASSSVALDFKSLT*SIL 296
S++ S+ S S ++ + S++ ++P+ T+ S + +SSS + S + S +
Sbjct: 182 SSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFI 241
Query: 297 TLKSIFSIVSFTLNTSLSKVT*CNTLKLSNITCLTAFNLS 416
T S + +S T+ + S + + ++ + T A N S
Sbjct: 242 TTMSSSTFIS-TVTVTPSSSSSSTSSEVPSSTAALALNAS 280
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -2
Query: 286 YVRLLKSSATEDDALFLLVNND---LVVIKSTGILKVVENLGKVSAFSKETDSLLIYAVD 116
Y++ L+ + D + V ++ + V ST +L ++ KV + +L+Y +
Sbjct: 280 YLKELQEFCEQKDLSYTTVKDNWDNITVAPSTNVLFLLSVPSKVRDALISSSRILLYTPE 339
Query: 115 KKVYGFIPL 89
+ +G +PL
Sbjct: 340 NEHFGIVPL 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,804
Number of Sequences: 5004
Number of extensions: 60339
Number of successful extensions: 208
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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