Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c21r
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711...    30   2.3  
08_02_0812 - 21444112-21444273,21444374-21444488,21445369-214454...    29   5.4  
11_01_0062 - 476027-476044,476791-477195,477287-477574,477653-47...    28   7.1  
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680     28   7.1  
03_05_0440 + 24322332-24322388,24323478-24323615,24323654-243237...    28   7.1  
10_06_0167 + 11401984-11402023,11402024-11402293,11402499-114026...    28   9.4  

>02_02_0138 +
           7114949-7115656,7116388-7116435,7116830-7117988,
           7118336-7118424,7118697-7118732
          Length = 679

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 460 KAYKVTENGNKYVLDDKLKAVKQVMFDNFN-VLHYVTLDNEVFKVKETMEK 311
           K YK+       +LD   KA  ++MFDN   V H   L ++ F+V E M++
Sbjct: 215 KGYKLDIFAYNMLLDALAKAGMKIMFDNREWVFHMYMLVDQAFQVFEDMKQ 265


>08_02_0812 -
           21444112-21444273,21444374-21444488,21445369-21445487,
           21446589-21446757,21447082-21447233,21447349-21447492,
           21447575-21447687,21448265-21448316,21448408-21448494
          Length = 370

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 189 KLSRTWGKCQHFLRKPIHCLYTRWIK 112
           K S  W   Q  L   +HC Y RWI+
Sbjct: 256 KTSEEWNAAQAQLNGTVHCDYPRWIE 281


>11_01_0062 -
           476027-476044,476791-477195,477287-477574,477653-477830,
           478005-478133,478531-478729,478832-478970,479130-479195,
           480459-480580,480672-480742,480819-480903,481335-481453,
           481577-481687,481945-482117,482375-482446,482768-482862,
           483361-483450,483550-483646
          Length = 818

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 763 SNAEKSDGXIYTIHA--DVNDNRREKGVYEVDLNLNTTVKILDKGRDLCYDDD 611
           S A+  D  +Y I+   +V+D+   +G       L      +D G D+CYDDD
Sbjct: 247 SLAQSEDSDVYDIYTVKEVDDDTTMEGTSSAPYPLLQ----VDNGDDVCYDDD 295


>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
          Length = 936

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 550 FKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQ 392
           FK+Y    +D+ISL K+      Y   N +K  ++ E   K + D++L+  K+
Sbjct: 687 FKRYPKGFSDLISLKKIESKGFLY---NKDKDKQLLEWSTKGITDEQLQMTKE 736


>03_05_0440 +
           24322332-24322388,24323478-24323615,24323654-24323736,
           24325038-24325128,24326091-24326189,24326356-24326418,
           24327182-24327259,24329354-24329543,24329812-24330065,
           24330159-24330531,24331193-24331276,24332085-24332371,
           24332495-24332542,24333194-24333220,24333951-24333987,
           24334063-24334250,24334343-24334521,24334595-24334877,
           24335481-24335717,24335798-24335988,24336552-24336561,
           24336844-24336984,24337073-24337288,24338437-24338727,
           24338852-24339025
          Length = 1272

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 25/100 (25%), Positives = 43/100 (43%)
 Frame = -2

Query: 553 SFKKYGTFKADVISLTKMNGSDLFYAVTNDNKAYKVTENGNKYVLDDKLKAVKQVMFDNF 374
           S++KYG     V S  +   S++  A+ N NKAY     G           +  +M D++
Sbjct: 146 SYRKYGKDWRKVASSIRDRTSEMVEALYNMNKAYLSLPEGTA-----TAAGLIAMMTDHY 200

Query: 373 NVLHYVTLDNEVFKVKETMEKIDFNVKIDYVRLLKSSATE 254
           N+L     D+E     +T  K     +  +  + K+S T+
Sbjct: 201 NILDGSNSDHESNGSPKTSRKPRKRGRAKFQSVSKASDTQ 240


>10_06_0167 +
           11401984-11402023,11402024-11402293,11402499-11402632,
           11402737-11403663
          Length = 456

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 655 VKILDKGRDLCYDDDSTIYVASNDGIYVYKTGD 557
           V ++ KG+DL YDD   + + + D    Y TGD
Sbjct: 243 VSVVTKGKDLYYDDAEILDMVTIDLSSNYLTGD 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,228,877
Number of Sequences: 37544
Number of extensions: 303251
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)